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High quality draft genome sequence of Meganema perideroedes str. Gr1T and a proposal for its reclassification to the family Meganemaceae fam. nov.
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Integrating Experimentation with Data
… (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) for “Empowering Automated Laboratories: Integrating Experimentation with Data.” … user meeting will feature insightful presentations, dynamic panel discussions, informative poster sessions, …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm microbial diversity is … how big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … families. From there they focused on families with at least 100 members.  “If you have 100 sequences, the quality of the …
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Natural Prodcast Episode 2: The Primer, Part 2
… to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the science and scientists … and the state of the field today. So, not as much of a preamble this time. Let’s jump right in. — DAN: So secondary … who was working on these things in the very early 1900s.  DAN: And so he has drawn what he called …
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Frederik Schulz
… eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, … University of Vienna (Austria) … Krinos et al. 2024. Time-series metagenomics reveals changing protistan … FY2021 Austrian Academy of Sciences Fellowship (2011-2015) DAAD (“German Academic Exchange Service”) …
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Nikos Kyrpides
… the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and … (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial Genomes and Metagenomes Program since 2011. Prior to joining the DOE Joint Genome Institute, Dr. …
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
A special issue of Synthetic Biology celebrates research enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating … collaboration has been incredibly productive; more than 10 papers, including two Nature Plants publications, in five …
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Yasuo Yoshikuni
… design for DOE-mission-relevant discovery and applications. This program has supported over 250 projects since … efficient than glycolysis., Nature Chemical Biology , 2024 Dubinkina et al., A transcriptomic atlas of acute … clusters in bacteria, Cell Chemical Biology , 2022 … R&D100 Award finalist 2019 SIMB Young Investigator Award 2013 …
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Scaling Up Existing Skill Sets
UC Merced students with seven JGI researchers for bioinformatics internship opportunities in fields ranging from … to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared their experiences below. Name: Noelle Anderson Class Year: At the time of the …
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New Research Sheds Light on Diversity in the Deep Sea
… vents are ocean-floor openings in the Earth’s crust that emit hot, mineral-rich water. These vents are too deep in … function in such extreme conditions. They identified 511 new or recently discovered genera of bacteria and … by the US-National Science Foundation grants OCE-0728391, OCE-0937404, OCE-1558795 to A-L.R, and OCE-2049478 and …
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I-Min (Amy) Chen
… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one of … Application Development Systems at Gene Logic, Inc. from 1997 to 2005, responsible for the development of key … rich annotations and metadata. Nucleic acids research Jan 2024 Chen IA, Markowitz V, Szeto E, Palaniappan K, and Chu …
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