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Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae
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From Competition to Cooperation
… associations allow host plants, such as candidate  bioenergy feedstock crops, to acquire nutrients. Additionally, … Centre, Clark University, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … assist researchers in moving toward functional genomics studies to learn more about the inner workings of plant-host …
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EcoFAB 2025: Advancing Mechanistic Microbial Science Using Fabricated Ecosystems
… from largely observational to reproducible mechanistic studies.  This conference is inspired by the vision of …
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Building Sphagnum Genomic Resources
… Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel applications. The … temperatures. For this reason, the U.S. Department of Energy is overseeing the SPRUCE (Spruce and Peatland … the case for Sphagnum as a versatile model system for studies of carbon cycling in diverse environments. In …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… the first cross-kingdom spatially-resolved transcriptomics studies to date. This paper  is the cover article for the … Cole is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … of this paper and a graduate researcher at the Joint BioEnergy Institute (JBEI). Cole led the work in collaboration …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… lessons they can teach us, are why the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … and associated methylome, transcriptome and metabolome analyses for C-fern that was able to shed some light on the … The work conducted by the US Department of Energy Joint Genome Institute is supported by the Office of …
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Webinar: PhycoCosm Tutorial
… have some reference plant genomes to help with comparative studies of algae and we have various protists such as oomycetes. We think they’re valuable for comparative studies (see video for Alan’s response)     … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User …
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Partnerships: Adopt-A-Genome
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Publication Policy
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Cataloging the Microbes that Manage the Health of River Systems
… systems, and their health is heavily reliant on the energy and nutrient flows that the microbes in these bodies … and in turn affecting environmental and human health, energy production and agriculture. Understanding the … explore and reuse the data from the GROWdb for comparative analyses with their own data on the KBase platform, without …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Wang, a computational biologist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of … health care to the financial sector — whether to identify studies and protocols or analyze and predict market trends. … was trained on a supercomputer operated by the National Energy Research Scientific Computing Center, through …
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Webinar: SIP technologies at EMSL and JGI
… narratives, or plans to develop narratives in KBase for SIP studies? I’d be interested in how it could possibly be … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User … genomics in support of DOE missions related to clean energy generation and environmental characterization and …
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