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Inaugural Critical Minerals & Materials Joint Research Portfolio Announced
…   A total of 20 proposals were selected by the Joint Genome Institute (JGI) and the Molecular Foundry (TMF) for … involving critical minerals and materials. The Joint Genome Institute and Molecular Foundry are DOE Office of … the capabilities of individual laboratories.  The full list of 2026 Critical Minerals & Materials Call recipients …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep subsurface ecosystem. The Science … of countering multiple attempts at virus infections. Their genomes include short DNA sequences that code for CRISPR … yet abundant subsurface organisms was  recently reported in Nature Communications. The work was co-led by Victoria …
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Simon Roux
… in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the development … learning framework to maximize host prediction for metagenome-derived viruses of archaea and bacteria. PLoS Biology … targets of hypermutation in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum …
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JGI Advisory Committees Code of Conduct
… staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … gene functional roles, but the experimental inconsistency makes interpretation and integration across studies … accomplishing this requires a diverse team of specialists, each contributing their expertise to different …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Rex Malmstrom
… genomics pipeline that provides JGI users access to the genomes of uncultured microbes.  His group also handles the … viruses. Nature Comm . 9 (1), 4881 Tsementzi, D. et al. 2016. SAR11 bacteria linked to ocean anoxia and nitrogen … PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide selective sweeps and gene-specific sweeps in …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… handles droughts, floods and poor soils. This is the first paper that describes sorghum’s response to drought, from a … Laboratory, and the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User … are well known to be partially due to the DNA sequence that makes up an individual’s genome. The genes of sorghum plants …
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Single Nucleotide Polymorphism Charting of P. patens Reveals Accumulation of Somatic Mutations During in vitro Culture on the Scale of Natural Variation by Selfing
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Busting the Unbreakable Lignin
… of California at Santa Barbara  recently published a paper in  Nature Microbiology offering irrefutable evidence that … with researchers at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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Enlarging Windows into Understanding Gene Functions
… four letters represents an organism’s genetic code, or genome, which underlies physical features and functions. … Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first authors Leo … each transcription factor of interest. Nature Methods paper coauthor Lee did the initial development of a …
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A One-Stop Shop for Analyzing Algal Genomes
… genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … and enthusiasts to look deep into more than 100 algal genomes, compare them, and visualize supporting experimental … In part because of this evolutionary diversity, algal genomes can be incredibly complex and difficult to sequence …
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