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Identifying the Microbial Cleanup Crew at a Superfund Site
… reveals the microbial community involved in a bioremediation effort. The Science In 1999, the Environmental Protection … areas that require cleanup and long-term monitoring. The DOE has been similarly invested in environmental management, … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… work. This is where the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … synthesis support, sequencing, integrative -omics, and data mining, empowering research collaborators to take on … their collaborations. One review article in the collection, Genomics-enabled analysis of specialized metabolism in …
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You Can Move, But You Can’t Hide
… created by researchers under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley … cycles around them. By understanding more about the genomics of MGEs and their evolution at the cellular level, …
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Zhong Wang
… new bioinformatics solutions to support JGI in adopting new genomics technologies, scaling up genomics analysis to peta-bases, and enabling data-driven science. This is a group of computational … GPU, Cloud etc) and their applications in solving DOE’s most challenging problems. … PhD Cell Biology. Duke …
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Expanding Virophage Diversity
Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & … an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The work also used …
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MISIP: a data standard for the reuse and reproducibility of any stable isotope probing-derived nucleic acid sequence and experiment
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JGI Announces 2023 Community Science Program Awardees
Congratulations to the proposers of the 19 proposals selected … Science Program call of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … of emphasis: genes to function, plant and algal functional genomics, inter-organismal interactions, understanding …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) … is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship Program. Kaze is part of Mark Sistrom’s … to work with JGI virus researchers and harness the IMG/VR database. “The SCGSR award will further my goal of resolving …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE … Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area …
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Tanja Woyke
Dr. Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her … deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, … J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding …
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JGI Earth Month: Wetlands Work in #TenHundredWords
April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … deputy and head of the Microbial Systems group through the  DOE Office of Science Graduate Student Research (SCGSR) … Kaze was part of the  2018 cohort of the JGI-UC Merced Genomics Internship Program, and is part of  Mark Sistrom’s …
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Annual Genomics of Energy & Environment Meeting
Thank you for joining us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes … infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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