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2024 Progress Report
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JGI@25: From Life at the Extremes to Editing Genomes
… refine and improve the process of finding novel Cas genes and CRISPR systems. The collaboration has resulted in … Is Required for Some Type V CRISPR-Cas Systems Mol Cell. 2020 Aug 6;79(3):416-424.e5. doi: 10.1016/j.molcel.2020.06.022. Wright AV et al. A Functional Mini-Integrase in …
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Recent Activity in Expanding Populations and Purifying Selection Have Shaped Transposable Element Landscapes across Natural Accessions of the Mediterranean Grass Brachypodium distachyon
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Natural Prodcast Episode 2: The Primer, Part 2
It’s an evolution of primary metabolism. So a lot of the genes and the DNA that’s used for secondary metabolism, they … of primary metabolism. They’re duplications of the genes, and modifications that have been made to – that …
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Niche differentiation is spatially and temporally regulated in the rhizosphere
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John Vogel
… of Brachypodium distachyon as an experimental model for the grasses. In addition to this fundamental work, he established an efficient switchgrass transformation pipeline and, in collaboration with … no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid genome evolution revealed by a …
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Finding the Fermenters
IMG data portals to get information about the genomes and genes of the organisms on the list. They also searched IMG/M for all protein-coding genes belonging to each genome. The final dataset – … ) with a series of large datasets. One test was to predict traits of more than 400 cultured rumen prokaryotes from the  …
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Picking Up Threads of Cotton Genomics
… lineages. Senior authors of the  paper published April 20, 2020 in  Nature Genetics include Jane Grimwood and Jeremy … cottons, along with noted key fiber development genes. The results indicate remarkably high overall sequence … genomes identified unique genes related to fiber and seed traits in the domesticated  G. barbadense and  G. hirsutum …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, captions are available) … available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … and test how many they thought would be necessary. Switchgrass has an enormous metabolome, and we wanted to have …
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Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass
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Bayesian Analysis of Congruence of Core Genes in Prochlorococcus and Synechococcus and Implications on Horizontal Gene Transfer
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Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen
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