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Plant Pan-Genomics Comes of Age
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Science Programs
… their expertise to enhance the scientific impact of user projects, develop cutting-edge approaches for and with users, and create computational tools and resources for them. Their concerted efforts …
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High quality permanent draft genome sequence of Chryseobacterium bovis DSM 19482T, isolated from raw cow milk
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… Program was brimming with excitement and determination as they came onsite. From data carpentry to science … and their JGI mentors are listed below, along with their project focus areas: Undergraduate Interns Andrew Lin and … and Exploring Novel BGC Detection Techniques on Fungal Genomes Video Transcript: Emerald Nash : What I’m working on …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct … their gene expression, the team then sequenced community genomes and expressed gene transcripts (metagenomes, … out that, without the JGI, the discoveries made in this project wouldn’t have been possible. Scientists hadn’t known …
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Atif Shahab
… of an integrated platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project management, laboratory information tracking, and enables efficient analysis and reporting of … University of New South Wales, Australia; MS in Computer Science, University of New South Wales, Australia …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… other forms of  Chloroflexota that adapted to marine environments hundreds of millions of years ago.  The Impact Chloroflexota are bacteria … These biodiversity hotspots harbor specialized microbial communities living in extreme conditions. The microorganisms …
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Fungus Fuels Tree Growth
… Researchers start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.   … To see how the fungus affected poplar growth, the team compared poplar cuttings grown with and without an … Program in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… at the University of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint … researcher Joseph Napier from the Juenger lab and computational biologist Paul Grabowski of HudsonAlpha …
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Understanding Wildfire Recovery, Starting in Soil
… a microbiome of bacteria, viruses and fungi process carbon and nitrogen, paving the way for future plants and trees … to health, researchers have taken a look at microbial genomes across a spectrum of burned soils. By connecting … DOE Office of Science National User Facilities in a single project. …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … holds keys to drought and flood resilience, biomass production for fuels, and growth in poor soils. In addition to … of Energy, the Gates Foundation, the Advanced Research Projects Agency-Energy (ARPA-E) and the United States Agency …
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JGI Part of Berkeley Lab Team Awarded Best Use of HPC in Life Sciences
… “ Berkeley Lab Receives Multiple 2021 HPCwire Awards ” on the Berkeley Lab Computing Sciences site. Lawrence Berkeley National … went to the Berkeley Lab team comprised of JGI and ExaBiome Project team, supported by the DOE Exascale Computing … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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