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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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Metagenomic Methods for Addressing NASA's Planetary Protection Policy Requirements on Future Missions: A Workshop Report
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Team develops a computational pipeline to sift and characterize RNA virus sequences.  … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … datasets from the JGI’s Integrated Microbial Genomes & Microbiomes (IMG/M) system. “We then looked into …
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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1T), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, … Ray’s vigilant stewardship as JGI’s Operations Deputy has come to a close as this previously retired Naval Commander … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He …
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Diverse and unconventional methanogens, methanotrophs, and methylotrophs in metagenome-assembled genomes from subsurface sediments of the Slate River floodplain, Crested Butte, CO, USA.
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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DOE JGI Interns Share Their Summer Experiences
… the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s … summer were: Rida Ali, who worked with T.B.K. Reddy on the Genomes OnLine Database; Sarah Fruchart , who worked with … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on presentations to peatlands Travis Lawrence sits in … At ORNL, Lawrence brings a bioinformatics expertise, a combination of biology and computer science, to reveal clues … . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… hermaphrodites, expressing both male and female gametes in one individual. But some, including shrub willow  Salix … The JGI sequenced the shrub willows through the  Community Science Program , using long-read sequencing to … (2017YFC0505203, 2016YFD0600101), and the National Key Project for Basic Research (2012CB114504). The work …
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Nikos Kyrpides
… lead the Genome Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics … at the University of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on …
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Web of microbes (WoM): a curated microbial exometabolomics database for linking chemistry and microbes
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