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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Work With the JGI! Tips for a Winning CSP Proposal
… stage, anywhere in the world, for free. We accept new projects related to energy and the environment several times … this episode, hear proposal tips from Tanja Woyke, who runs user programs at the JGI, and project manager Miranda …
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10 From JGI on the 2019 Highly Cited Researchers List
… of 21 fields appear on the 2019 list. Congratulations to: Project Manager Kerrie Barry, Cross-Field Category Fungal … categories Microbial Systems research group lead and User Programs Deputy Susannah Tringe, Cross-Field category …
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A Natural Mechanism Can Turbocharge Viral Evolution
The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a “head-tail” … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility located at Lawrence Berkeley National … (DP150100244) and the Australian Antarctic Science program (project 4031). The work in the Hallam Lab was performed …
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Simon Roux
… to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research … Pascal, France … Neri et al., 2023. Expansion of the global RNA virome reveals diverse clades of bacteriophages. Cell …
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Uri Neri
… discovery and analysis, with a particular fondness for RNA viruses – though he'll take a look at anything related to microbial parasites. When not debugging pipelines, he can be found trying to convince others that RNA viruses are actually interesting and not just "spicy …
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Gene Expression: From On-Off Switch to Dial
… systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary … of betaxanthins. They used combinations of single guide RNA, or a single RNA piece that recognizes a particular area … User Facility, is supported under Contract No. DE-AC02-05CH11231. …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … … The work (proposal: award at  https://doi.org/10.46936/10.25585/60001405 ) conducted by the US Department of Energy …
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JGI Announces 2025 New Investigator Portfolio
… researchers) Each year, the JGI searches for novel research projects from PIs who have not led any previously accepted … and environmental DNA sequencing to explore microbial and plant interactions across unique ecosystems, … for this ongoing call; the next deadline for proposal submission is Sept. 9, 2025, for inclusion in the November …
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You Can Move, But You Can’t Hide
… of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory … in soils and water. MGEs like viruses and plasmids drive microbial processes and evolution. This is because MGEs can … used computational resources from the Exascale Computing Project (17-SC-20-SC), a collaborative effort of the U.S. …
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2024 Progress Report
Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … users who made use of our data. We completed 39,870 projects in FY24 We generated 871 Terabases of sequence We … attendees with a rich agenda across our scientific programs, as well as workshops that gave participants …
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Trent Northen
… has had leadership roles within large DOE-funded research programs using mass spectrometry for energy and … through the Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI … to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using …
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