Results

Large-scale replicated field study of maize rhizosphere identifies heritable microbes
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A comparative genomics study of 23 Aspergillus species from section Flavi
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Bioinformatics Analysis Tools for Studying Microbiomes at the DOE Joint Genome Institute
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CRAGE-Duet Facilitates Modular Assembly of Biological Systems for Studying Plant–Microbe Interactions
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Coming-of-Age Characterization of Soil Viruses: A User’s Guide to Virus Isolation, Detection within Metagenomes, and Viromics
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In silico analysis of the expression profile of AA9 Lytic Polysaccharide Monooxygenases (LPMOs) and the CDH Cellobiose Dehydrogenase enzyme in wood-degrader Agaricomycetes. The Pleurotus ostreatus case
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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How to Target a Microbial Needle within a Community Haystack
… complex community, the search for its genome amidst all the other sequences can be even more challenging. To overcome … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … was enabled by the JGI’s  Emerging Technologies Opportunity Program . The ETOP helps researchers develop technology that …
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Dan Rokhsar
Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer … Laboratory 2000 John Simon Guggenheim Fellow 2000-present Program Director, Berkeley NHGRI Training Program in Genomics and Computational Biology … Education … …
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The widespread IS200/605 transposon family encodes diverse programmable RNA-guided endonucleases
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2024 Progress Report
Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic capabilities, … positioned to combine sequencing, DNA synthesis and other omics technologies with computational analysis and … attendees with a rich agenda across our scientific programs, as well as workshops that gave participants …
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Protocols
Find protocols provided by JGI and the JGI user community below for DNA preparation tools, high …
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