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Jeremy Schmutz
… working for the Stanford Human Genome Center, now the HudsonAlpha Institute for Biotechnology. There he constructed the pipelines for directed finishing and co-led the … of five Gossypium allopolyploid species and their impact on cotton improvement. Nature Genetics 52: …
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Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
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The Biota Project: A Case Study of a Multimedia, Grassroots Approach to Scientific Communication for Engaging Diverse Audiences.
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Gut Fungi: Unexpected Source of Novel Chemicals
… of oxygen, dwell in herbivore guts and help them digest their last leafy meal. In their evolutionary history, these fungi branched off early from aerobic … the energy to make complex compounds called natural products . Yet, combing through the genomes of four anaerobic …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The … major food crops and feedstocks for biomass and biofuel production. Learning about the ecology and evolution of  … (green). (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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David Goodstein
With a background in experimental and computational surface physics, Dr. Goodstein held positions at Cornell, IBM, Utah State University, and semiconductor equipment manufacturer KLA-Tencor before joining the … . Annual Review of Plant Biology 72, 411. Gordon et al., 2020.  Gradual polyploid genome evolution revealed by …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the … Genome Sequencing Center. Grimwood heads the Library Construction group for the JGI Plant Program . Her collaborations … Cited Researchers list assembly by Clarivate Analytics. In 2020, she was named a Yellowhammer Woman of Impact.     …
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A Mentor’s Perspective on Training the Next Generation
Over the years, hundreds of interns have come to the JGI from all parts of the globe to gain lab experience and contribute to ongoing projects. In one way or another, they’ve all mentioned how invaluable their time at the JGI was and how great it was to have an …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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Toward More Efficient Artificial Photosynthesis
Chloroplast mimic a platform to capture and utilize carbon in a synthetic fixation cycle. The Science Chloroplasts … it as a sustainable resource for making high-value bioproducts. As a step toward the long-term goal, researchers are … them to test composition variants. Summary In the  May 8, 2020 issue of  Science , a team led by Tobias Erb, director …
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