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Better Genome Editing for Bioenergy
To ensure the gene editing tool will make the right cut, researchers created a set of guide RNAs that were effective … that lead to increased lipid production. These insights into  Y. lipolytica biology and lipid metabolism furthers … study,  published in  Metabolic Engineering , a team of researchers likewise honed their tool before felling their …
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Eelgrass Proves to Be Much Younger Than We Thought
… eelgrass adapted and evolved throughout its history. Their research, published in  August 2023 in  Nature Plants , was … clock independently provided timepoints of eelgrass’s major global colonization events. The U.S. Department of Energy … — bioinformatics expertise, as well as sequencing for all global populations of eelgrass used in the study to reveal …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… yet much of it remains unknown. For more than a decade, researchers around the world have collaborated with the U.S. … culture collection of international renown, from which a researcher can easily procure a culture for follow up work, … DSMZ’s vast strain resource, but also yielding and supporting many high-impact publications ,” emphasized …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… that came with crayons in various shades of white. To researchers searching for sequences of RNA viruses in large … in RNA without a DNA stage. “I would argue RNA viruses globally are even less known than DNA viruses,” said Simon … Genomes & Microbiomes (IMG/M) system. “We then looked into many more samples and refined our methodology,” Neri …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … picture of a virus, and for viruses that have integrated into the host genome, these sequences may be tainted by the … & Microbiomes (IMG/M) suite, as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. …
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JGI Portals
… and metagenomes — top-quality genomic data, open to all researchers. … The JGI Genome Portal provides unified access … orthology/paralogy relationships as well as insights into clade-specific novelties and expansions.  … The SMC …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a … hearts, we’re featuring some scintillating genomic science research that feels especially relevant to living on a … his project, and riffed a bit on what it means in a more global context. As we approach Earth Day, I thought you …
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Igor Grigoriev
… and PhycoCosm portal. Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous … genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits. Nature Commun … Varga et al (2019) Megaphylogeny resolves global patterns of mushroom evolution. Nature Ecol Evol . …
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Pinning Down a Piece of Photosynthesis
… the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in … at Stanford’s SSRL were able to provide crucial data supporting the presence of the zinc-mirror heme site — the …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… sequence and annotate genomes from Antarctica to Africa to global oceans. Through the Community Science Program of the … Additionally, 40 percent of the proposals were submitted by researchers who had not been a primary investigator on any … with key DOE Office of Biological and Environmental Research (BER) initiatives in bioenergy crop improvement and …
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Massie S. Ballon
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Making a Lichen Together
… mycobiont. However, despite a century-and-a-half of lichen research, many of the symbiosis’ details remain unclear. For … molecular mechanisms can help researchers better model global carbon and nitrogen cycling. Summary To shed light on … has opened the door for more incisive investigations into how lichens function. One of their abilities that’s  …
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