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Jeremy Schmutz
Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when he was working for the Stanford … human chromosomes 5, 16, and 19. Following the completion of the human genome project in 2003, he developed … produced by the DOE Joint Genome Institute and the collaborative projects funded through the CSP program. In …
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Microbiome Data Science Team
… and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology advances … (2016) Microbiome Data Science: Understanding Our Microbial Planet. Trends Microbiol. 24(6):425-7. Eloe-Fadrosh EA, et …
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User Support Analysis Group
The User Support Analysis group provides computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … epigenomics. Our work varies in scope from the development of highly customized analysis workflows for new product …
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Kjiersten Fagnan
Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing consultant, after completing a petascale … methods for reacting subsurface flows, and evolved into scalable methods for scientific data analysis. In 2014 Dr. … closely with staff to understand the data-intensive nature of JGI workloads. Dr. Fagnan was appointed CIO of the JGI in …
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Complete genome sequence of Deinococcus maricopensis type strain (LB-34T)
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), relied on a model grass system … the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… the slightly murky waters in the tube look like a scoop of stormwater, complete with leaves, debris, and even … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) and the Laboratory for Research in … Using various microscopy techniques, such as hard x-ray tomography, for instance, he visualized entire filaments …
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Tina Clarke
Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources Division Partner for … and supervisors to recommend solutions and appropriate actions on diverse HR related matters. She began her HR … Sonoma State University. Early on Tina knew the importance of understanding human and group behaviors as her role in HR …
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … the greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows … genes in the nucleus and organelles such as the chloroplast. In the cases where data are available, a user can also …
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the … the greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows … genes in the nucleus and organelles such as the chloroplast. In the cases where data are available, a user can also …
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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality genome and now … most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), with assistance from partners at …
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