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Natural Prodcast Episode 2: The Primer, Part 2
… DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a … I did want to impress, too, is that secondary metabolism is based on primary metabolism. It’s an evolution of primary … This the second episode of Natural Prodcast, which continues a conversation from the …
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led … it to fill gaps in the under-sampled area of the plant phylogeny and improving genome annotations. For that …
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Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence
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Functionally conserved enhancers with divergent sequences in distant vertebrates
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Whole metagenome sequencing and 16S rRNA gene amplicon analyses reveal the complex microbiome responsible for the success of enhanced in-situ reductive dechlorination (ERD) of a tetrachloroethene-contaminated Superfund site
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, … “It offers us the possibility to explore genomically the whole complex of progenitors and descendant species and, … of the polyploid reference line is simply not true based on previous pan-genome studies. Thus, we must compare …
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Special Initiatives & Programs
… ,  Science Focus Areas  (SFA) opportunities, and the  Office of Science Early Career Research Program .   If “BERSS” is … for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … to sustainable, economically viable production of bio-based products and advanced biofuels. The center focuses on …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… By characterizing the structure and function of a methylthio-alkane reductase system, researchers could … they worked with the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … into mechanistic understanding. They engineered a plasmid-based Rhodospirillum rubrum system to overexpress the MAR …
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The genetics of divergence and reproductive isolation between ecotypes of Panicum hallii
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Evolutionary Divergence of Marinobacter Strains in Cryopeg Brines as Revealed by Pangenomics
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… determination. Rhondene Wint, an alumna of the DOE Joint Genome Institute (JGI)-UC Merced internship program and … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … Wint also developed and tested a gene sequence-based predictor of gene expression levels using machine …
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