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Functional investigation of five R2R3-MYB transcription factors associated with wood development in Eucalyptus using DAP-seq-ML
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Soil virus offers insight into maintaining microorganisms
… Using the IMG/M data portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative … at Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 images of crystalized samples cloned and … Focus Area “Phenotypic response of the soil microbiome to environmental perturbations” to JKJ and KSH. A portion of …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Polysaccharide utilization loci of North Sea Flavobacteriia as basis for using SusC/D-protein expression for predicting major phytoplankton glycans
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Systematic Identification of Gene Families for Use as “Markers” for Phylogenetic and Phylogeny-Driven Ecological Studies of Bacteria and Archaea and Their Major Subgroups
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Mapping N-Linked Glycosylation Sites in the Secretome and Whole Cells of Aspergillus niger Using Hydrazide Chemistry and Mass Spectrometry
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Evolutionary Analyses of Gene Expression Divergence in Panicum hallii: Exploring Constitutive and Plastic Responses Using Reciprocal Transplants
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Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the … for our users,” says JGI Director Nigel Mouncey. Using CRAGE, JGI has established a portfolio of microbial …
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Computationally Classifying Fungal Lifestyles
… Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of … (From Haridas S et al.  Studies in Mycology , 2020.) Using whole genome data from newly sequenced genomes, they … The work conducted by the U.S. Department of Energy Joint …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights … conditions, or it could couple the two metabolisms by using sulfite to oxidize methane and hydrogen. McKay … User Facility located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… link in the evolution and transition of fungi from aquatic to terrestrial habitats. The work is part of the JGI’s 1000 … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of … were then sent to the JGI for whole genome sequencing using the Illumina platform. Unfortunately, both the DNA and …
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