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Complete Genome Sequence of Cupriavidus basilensis 4G11, Isolated from the Oak Ridge Field Research Center Site
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CSP New Investigator Call
… The CSP New Investigator Call is for investigators and research initiatives new to the JGI. Projects must … FICUS proposal.   Competitive projects will provide pilot data to assess feasibility of a novel approach or form the … for scientific merit, DOE mission relevance , proposed data usage by the applicant/community, and track record of …
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Network Modeling of Complex Data Sets
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Expanding the genomic encyclopedia of Actinobacteria with 824 isolate reference genomes
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Axel Visel
… Institute in Hanover, Germany, where he developed novel tools for large-scale in situ gene expression analysis in … for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of thousands of genetic … implicated in developmental and disease processes in the human genome. In addition to his appointment at the DOE …
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Microbiome Engineering: Synthetic Biology of Plant-Associated Microbiomes in Sustainable Agriculture
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Mapping the Earth’s Hidden Fungal Kingdom
… years, making it nearly 30 times older than the entire human lineage. Yet despite their ubiquity and ancient … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial …
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acdc – Automated Contamination Detection and Confidence estimation for single-cell genome data
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Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements
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Silver age of GOLD introduces new features
… The JGI’s Genomes OnLine Database celebrates 25 years as a vital resource for data … a flagship  genomic metadata repository, making curated microbiome metadata that follows community standards freely … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC Berkeley and work in the pharmaceutical … University of California, Berkeley. He contributed to the Human Genome Project and led annotation and analysis of diverse eukaryotic genomes, from protists to plants. In 2009, he launched the …
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JGI@25: From Life at the Extremes to Editing Genomes
… For the past few years they have partnered with JGI’s Microbiome Data Science group led by Nikos Kyrpides , mining … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V … LB et al. A thermostable Cas9 with increased lifetime in human plasma. Nat Commun. 2017 Nov 10;8(1):1424. doi: …
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