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Draft genomes and assemblies of the ectomycorrhizal basidiomycetes Scleroderma citrinum hr and S. yunnanense jo associated with chestnut trees
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Doubling Down on Known Protein Families
… online Oct. 11, 2023 in  Nature highlights the vast array of functional diversity of microbes through a novel approach … saying diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging … “They developed parallel algorithms to perform ‘all-vs-all’ comparisons and graph clustering able to run in such highly …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … including the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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Building a custom high-throughput platform at the Joint Genome Institute for DNA construct design and assembly-present and future challenges.
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases
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Filling in the Plant Tree of Life
… food, medicine, and bioenergy crops. But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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Ian Blaby
… platform at the Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … Award for Research Excellence … Education … Selected Publications … Awards and Honors …
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Improving genome assemblies by sequencing PCR products with PacBio
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Phased diploid genome assembly with single-molecule real-time sequencing
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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High quality draft genome sequence of the slightly halophilic bacterium Halomonas zhanjiangensis type strain JSM 078169T (DSM 21076T) from a sea urchin in southern China
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