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A Collaboration to Improve Plant Genome Annotations Across Species
… resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … more plants are studied? Avinash:   JGI puts huge efforts into generating reference genomes for new species allowing … and amino acid-specific metabolic pathways were overrepresented in the nitrate-subjected plants but not the …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… fungal metatranscriptome yet,” said Igor Grigoriev, Fungal Genomics Program Head at the JGI.  Along with an improved … Sweden; Montmorency, Canada. These sites respectively represent Mediterranean, temperate, and boreal forests.  Many … common to forests around the world, as well as meadows and pastures: saprotrophs disassemble debris and dead organisms …
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DAP-seq Drives Robust Mapping of Gene Regulation
… the power grid of gene regulation is finally coming into clear view. Behind the Breakthroughs: Advancing gene … with single-cell gene expression maps, providing insight into how regulatory pathways control specific cell types. “A … to help plants survive environmental stress.  Unlocking the Future of Genome-Enabled Discovery All data and code from …
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Special Initiatives & Programs
… set, or the refining of new technology (e.g., single-cell genomics; metagenomics, etc.).   The faculty-level scientist must be …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… with the HudsonAlpha Institute for Biotechnology.   Publications Grimwood, J., Gordon, L., Olsen, A. et al. The …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … advance biotechnology and biomanufacturing.  As a leader in genomics for bioenergy and environmental solutions, the JGI … users with capabilities to create genomics-enabled insights into a vast range of organisms and ecosystems. These kinds …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… their expertise in developing and managing public viral genomics resources such as analytical tools and data … developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The Program aims to … viral genomes. This includes (i) classifying viruses into groups that can be compared across studies, (ii) …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… program is now an author on a Nucleic Acids Research publication. The paper describes the version 6 data updates …
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DAS Tool for Genome Reconstruction from Metagenomes
… changes. Summary Researchers have been utilizing metagenomics as a way to study a collection of hard-to-culture … and automated binning methods also extends to harnessing future binning tools. DAS Tool is an example of how JGI … environmental samples of very complex microbial communities into complete or near-complete genomes to aid …
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The Mobilome in the Mire
… and new analysis methods are bringing this mobilome into light, and opening up new options for engineering these microbes in the future. Join Sarah Bagby (Case Western Reserve University) …
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Orthophosphate uptake onto woodchips in denitrifying bioreactors is enhanced by anoxic-(anaerobic-)oxic cycling
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The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle
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