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Genomic Features Predict Bacterial Life History Strategies in Soil, as Identified by Metagenomic Stable Isotope Probing
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DOE JGI Metagenome Workflow
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Terabase-scale metagenome coassembly with MetaHipMer
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ClaMS: A Classifier for Metagenomic Sequences
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
… researchers have leveraged data from the 1000 Fungal Genomes project to form new connections between fungal … and developed new tools to map that soil RNA to fungal genomes.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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New and Improved: Eucalyptus Reference is Now Accessible
… An improved genome assembly to support targeted tree breeding for the …   The Science Researchers report a new reference genome for eucalyptus in the July edition of the journal G3 Genes | Genomes | Genetics , with significant advances compared to … Borevitz) conducted by the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… archaea and eukaryotes, and they range in particle and genome size from small, to large and even giant. The genomes … been co-cultivated with amoeba or with their hosts, though metagenomics is now making it possible to seek out and … likely to just scratch the surface of what’s out there.  Beyond these 2,000 MAGs extracted from 8,000 metagenomes, …
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Fishing for Novel Cellulose Degraders
… by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to sort cells into several small pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is …
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2025 NeLLi Symposium
… students and postdocs): $250      Hosted by the DOE Joint Genome Institute, the University of Nevada, Las Vegas, and … function of candidate lineages in biogeochemical cycles and beyond, as well as microbial symbioses. We aim to foster … cultivating new bacteria and archaea revealed by a recent genome census . A key outcome will be a a compelling …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the HudsonAlpha … Institute for Biotechnology, which specializes in genome improvement for plants. As part of that partnership, … importance. The scope of handling 18 different species is beyond the capacity of a single lab. Growing different …
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