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… deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … belie. The technology he’s using is magical; transform any length of amino acid sequence into a smaller, …

Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids … to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. … processes. Summary geNomad is an annotation and classification framework that combines and builds on two …

A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, Philip Benfey at Duke University and … with resulting reports and a  perspective article . Publication: Shahan R et al.  A single cell Arabidopsis root …

Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where … National Laboratory where he focused on functional genomics of phototrophs. Through this and post-doctoral positions at … Award for Research Excellence … Education … Selected Publications … Awards and Honors …

Scientists find bee gut microbes have a division of labor when it comes to metabolizing complex … Honey bees are invaluable pollinators — cupids of the plant world facilitating the remixing of genes in the … out this metabolic feat. For both clades, then, strains are variable in their abilities. Zoomed out, what appears to be …

For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … is a superorganism: one being that is actually comprised of two (or more) participants. One is a fungus (usually … from the Duke Institute of Genomic Sciences and Policy (for DNA sequencing and assembly); by a three-year subcontract to …

For many scientists, the culmination of their work into a written report that is published in a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so rewarding,” Wint said. For Axel …

… . The Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to … N. crassa is the model organism for filamentous fungi, all of which contain a wide array of plant cell-wall degrading … Program through a proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining …