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In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay
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Gallionellaceae in rice root plaque: metabolic roles in iron oxidation, nutrient cycling, and plant interactions.
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Partnerships: Myco-Ed
DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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JGI announces 2023 CSP Functional Genomics awardees
…   Each year, the JGI accepts proposals for state-of-the-art functional … Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and omics capabilities to enhance …
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Tanja Woyke
… of User Programs. Click to learn more about the program's areas of focus, major initiatives and more.  … The Deputy of … Member for Lake Arrowhead Microbial Genomics Conference (2017-current) Genomic Standards Consortium Advisory Board … 499-509. Schulz et al. 2020. Giant virus diversity and host interactions through global metagenomics. Nature 578, …
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Corals in Hot Water Get Help From Their Microbes
When warm waters stress corals, it might be their microbes, including their photosynthetic partner, that help …
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JGI Workshop at 2025 Aquatic Sciences Meeting
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David Goodstein
… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to … research efforts expanded to include basal metazoans and plants. Working with a talented team of scientists and … progenitors. Nature Communications 11, 1. Gordon et al., 2017.  Extensive gene content variation in the Brachypodium …
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Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes
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Partnerships: Adopt-A-Genome
… a Genome” is an informal program for faculty to “claim” the JGI’s unpublished microbial genomes, with the expectation … of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522 R Robertson, et. …
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DOE JGI Metagenome Workflow
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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… snippet on Antonio Camargo and Simon Roux, a few of the JGI researchers behind software that finds plasmids and … elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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