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Alabama Agricultural & Mechanical University Internship Program
… success of the UC Merced internship program, they left the JGI more confident and ready to tackle real-world scientific issues. Our interns say their experiences allowed them to:  Learn …
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Webinar: MycoCosm Tutorial
… Learn more about JGI’s  MycoCosm data portal , an interactive collection of … for genome sequencing, or only “true fungi”? A(nswer): Our focus is on fungi, algae, plants, and the microbial … MycoCosm and Fungal Program pages ( https://jgi.doe.gov/our-science/science-programs/fungal-genomics/ ). You can also …
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Integrating Experimentation with Data
… $700    Thanks for joining the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory (EMSL) at their joint meeting! … JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities dedicated to …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences to aid with genome assembly and transcriptome analysis of microbial, fungal, and plant research projects.  … PacBio reads (i.e., reads with very low error rate), so our pipeline performs long-reads-only assemblies and not …
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Improving the Cacao Genome and Phytozome
… T. cacao has now been completed and released by HudsonAlpha scientists, with the help of funding from Mars Wrigley. The … for comparative purposes on the latest version of the JGI plant portal Phytozome at  phytozome-next.JGI.doe.gov . One of the goals in updating the genome …
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Marine Microbe Contains Multitudes
… genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In … pressure of the dark abyss, 4000 m (2.5 miles) deep. Scientists have wondered, how can SAR324 exist in so many …
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Finding the Fermenters
… Harnessing BER-funded data resources, researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… The JGI Engagement Webinar held November 5, 2020 (watch the  … analysis capability available through the  Community Science Program (CSP) . This includes mass … anywhere around the world can apply to access the JGI’s resources. Q:  Where can I get information for funding by JGI? …
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IMG ER: a system for microbial genome annotation expert review and curation
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The Impact of Genome Analyses on Our Understanding of Ammonia-Oxidizing Bacteria*
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Nikos Kyrpides
… Biology Program and the development of the comparative analysis platforms for microbial genomes and metagenomes (IMG). He became the Metagenomics Program head in 2010 and has the combined Microbial … on Microbiome Research with an emphasis on Microbiome Data Science. His group is developing novel methods for enabling …
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A Sorghum Pangenome Opens More Doors to Discovery
… and thousands of resequenced sorghum varieties, a resource for breeders and researchers to harness the traits … Biotechnology Genome Sequencing Center and a member of the JGI Plant Program. Lovell was a senior author on this work … Shakoor, a research scientist at Donald Danforth Plant Science Center.  This work is the result of an international …
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