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Cultivating Symbiotic Antarctic Microbes
… they are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and … host cells. In the  Proceedings of the National Academy of Sciences , a team led by Rick Cavicchioli at the University … host dependency of Antarctic Nanohaloarchaeota   … From our partners …
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Robert Bowers
Bob uses single-cell genomics and metagenomics to explore how microbes influence people and the environment. This includes studying the diversity, physiology and community ecology of microbes …
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Accelerating Metagenomics Discoveries with Deep Learning
… recognition: for example, a camera’s ability to recognize your face and distinguish it from your friend’s. Biologists aim to capitalize on these kinds of … of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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2024 Progress Report
Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead … complex biological and environmental systems. We optimize our service to the community through responsibly managing … attendees with a rich agenda across our scientific programs, as well as workshops that gave participants …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Ancient Algae Reveal Secrets of Plant Evolution
… helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal … relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from … able to grow in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass …
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Intrinsic and Extrinsic Programming of Product Chain Length and Release Mode in Fungal Collaborating Iterative Polyketide Synthases
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …
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Fishing for Novel Cellulose Degraders
… hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly … tool for microbial ecologists to learn more about the diversity of microbial enzymes, which could have a plethora … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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Simon Roux
Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses … Giant virus diversity and host interactions through global metagenomics. Nature 578, 432–436. … DOE BER Early Career …
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You Can Move, But You Can’t Hide
… mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley … to become an essential tool for researching global viral diversity. geNomad has already been downloaded thousands of …
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Ray Turner Completes Last Tour of Lab Duty at JGI
Michael Brandt (Operations Deputy), Horst Simon (Science Deputy), Jeff Blair (Chief Laboratory Counsel) and … in his event remarks. “I feel that is something crucial to our success, and Ray has been that. That person needs … to the ever-shifting landscape of funding Federal for programs, noted that “Ray is someone who just will get it …
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