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Arrayed Analysis Toolkit: analyzing spatially defined samples using mass spectrometry imaging. Analytical … Ruebel, O., Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and … with the unknown: metabolomics and metabolite atlases. Journal of the American Society for Mass Spectrometry, 21, …

… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria and fungi have genes that can break … messenger RNA sequences (transcriptomes) from their soil samples. This gene expression dataset was particularly …

UEC. As a user of the JGI and the Environmental Molecular Sciences Laboratory, another DOE user facility, she will … laboratory researchers. This will help the JGI shape its programs, capabilities, and resources to best meet the broad base of user community needs. …

… and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on … graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head of the Microbial Systems group …

Over the course of eight weeks this past summer, 10 students from UC … due to COVID-19 restrictions, but virtual events and technology enabled a fruitful experience for mentors and … genomics, and to help foster a diverse future workforce in science. Since the program’s inception, more than 30 …

… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … In  their study , which appeared in  The ISME Journal , they focused on how virus-infected microbes are … RNA sequencing was done by the JGI, and proteomics and metabolomics analysis and microscopy at EMSL. The team …

… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … to over 100  Dothideomycetes genomes, just enough of a sample size to test if a computer algorithm could …