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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
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Enlarging Windows into Understanding Gene Functions
… of the alphabet. Yet the specific sequence of these four letters represents an organism’s genetic code, or … Center in Hungary. His approved proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as …
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JGI@25: The Little Alga That Could
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … launched over a dozen of new Chlamydomonas genome-related Community Science Program projects of all kinds,” noted Igor Grigoriev, head of the …
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Access to Rock Star Scientists
… the big stuff, well, the little stuff! People hold office hours and you can pop in and ask them questions about all … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … Fungal Program “Working at the JGI has reinforced my plans to pursue a STEM career. I can see myself working at a …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked … Just as the common gardens have flourished, so has the community of switchgrass researchers grown. After almost two …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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Applying Viral Genomics Expertise to Understanding the Human Virome
Laboratory, have collaborated with global researchers on projects related to understanding how the interactions … in developing and managing public viral genomics resources such as analytical tools and data repositories to two … with us; and, Make virome data available to the research community. Kyrpides’ project, “ Advanced analytics for …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… bioeconomy, including, potentially, methane as an energy source.  Until recently, our understanding of these … metagenomics to sample the entirety of a microbial community out in its natural environment, scientists have … methanogens were, but they were discovered by genome sequencing, which is a much less biased approach to studying …
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Game On: High School Students Drive Everglades Metagenomics Study
… of Education (AICE) Biology class at Florida’s Boca Raton Community High School. The course had a defined set of objectives, and started with an … DNeasy PowerSoil Kits and sent the samples to the JGI for sequencing.  While JGI processed, sequenced, and analyzed …
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Effects of Polar Light Cycle on Microbial Food Web
… dominates these polar environments greatly contributes to our larger understanding of carbon and other nutrient cycles … over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published in  Microbiome shows … (Berkeley Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, Ace …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… large and giant. In a recent study  published in the journal  Nature , a team led by researchers at the U.S. … from several DOE-mission relevant proposals through JGI’s  Community Science Program . Proposals from researchers at … available but also complementary single-cell sorting and sequencing of viruses together with their unicellular …
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Fishing for Novel Cellulose Degraders
When they tested the screen method on a microbial community from geothermal hot springs, they uncovered a … pools, followed by whole genome amplification and shotgun sequencing. The team first tested the approach on bacterial … enzyme activity assay. The work was  reported in  The ISME Journal . While the screen caught several microbes from known …
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