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JGI@25: Solving the Mystery of the Missing Oil
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Expanding Virophage Diversity
… through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in JGI’s  … them without previously known representatives). Of these, 89 contigs were considered to be complete genomes, and their … the possible virophage genome size range from 13.8-29.3 kilobases (Kb) to 10.9-42.3 Kb. Additionally, the gene …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … code to a new architecture. Proposals are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in Walnut …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… in Complex Systems (LRC) in Menlo Park, Calif. In the June 24, 2022, issue of the journal Science, Volland and … at the Université des Antilles in Guadeloupe, in 2009. Gros’ research focuses on marine mangrove systems, and he … for instance, he visualized entire filaments up to 9.66 mm long and confirmed that they were indeed giant …
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Uncovering Novel Genomes from Earth’s Microbiomes
… expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes …
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Pinning Down a Piece of Photosynthesis
… list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that are unique to … a similar region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function … into focus. Blaby-Haas and her team hypothesized that DUF2470 was key to iron metabolism, and renamed it to Domain …
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A Collaboration to Improve Plant Genome Annotations Across Species
… sets, such as sorghum internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger … additional biological information to an average of 40 percent of genes across Gene Atlas plants. Comparing …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… across the species. These are primarily tetraploids (4X or four copies of the genome) and octoploids (8X or eight copies of the genome). Lovell et al. focused on the 4X variety, largely because it’s been prioritized in … After our team finished analyzing the diversity present in 4X switchgrass, we were surprised by the number of 8X …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… retired Naval Commander retires from Berkeley Lab. On June 24, in what was billed as a typical monthly JGI All-Hands … Deputy post by  Nick Everson , the person Ray hired in 2007 to serve as JGI’s Business Manager. In 2012, Nick jumped …
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Evolution of a Fungal Gene Expression Regulator
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Tracking the Origins of Methane-Producing Microbes
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