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The Surprising Structure of a Shrub Willow Sex Chromosome
… of mammals is, for the first time, seen in a plant. The Science Sex in plants can be befuddling. Most species are … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. The JGI sequenced the shrub willows through the  Community …
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Introducing New Members of the JGI User Executive Committee
… The JGI welcomes three new members to the JGI User Executive Committee (UEC) : Roland Hatzenpichler of … of the University of Arizona! They join nine other JGI users already serving on the UEC – go here to view the …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected … and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research … management best practices that have advanced the microbial sciences. The Prize also recognizes innovative and impactful …
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Igor Grigoriev
… Dr. Grigoriev joined the JGI in 2003, following his postdoctoral training at UC … joint appointments as Fungal and Algal Program Head at the JGI, a Senior Scientist at Lawrence Berkeley National … Dr. Grigoriev engaged thousands of researchers in genome projects and organized numerous genomics workshops. …
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Viral Genomics Group
… measurements ( Who is active when/where, and how? ). The JGI Viral Genomics group attempts to address this question … towards specific phages and/or hosts. To that end, the JGI Viral Genomics group is exploring different approaches … The JGI Viral Genomics group is leading and/or contributing to …
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Simon Roux
… Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … to link viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization … virus ecology and virus genomics, where he has engaged in collaborative, interdisciplinary research focused around …
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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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DOE JGI Metagenome Workflow
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Leo Baumgart
… binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and plants. His team is … DSM12444 transcription factors." Microbiology Resource Announcements 14, no. 8 (2025): e00260-25. Cassol, Daniela, … et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE …
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Trent Northen
… Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic methods available to JGI users.  Dr. Northen’s research is focused on using … Northen is the Metabolomics Science Program Head at the JGI. Click to learn more about the program's areas of focus, …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… viral genome found in the deep subsurface ecosystem. The Science Altiarchaea are carbon-fixing microbes and targets … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … 150 archaeal viruses had been previously identified. The JGI researchers surveyed publicly available data in the …
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