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Olpidium, The Key to the Origin of Terrestrial Fungi
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the … fungi, given that the intricate flagellar apparatus is highly unlikely to regain once it is lost. Depending on the … remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium , my colleagues …
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Crysten Blaby-Haas
… Dr. Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials Initiative, a partnership between JGI and the Molecular Foundry, a nanoscale research and … the development of a joint user capability between the JGI and Molecular Foundry for genome-encoded biomaterial …
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New and Improved: Eucalyptus Reference is Now Accessible
… targeted tree breeding for the bioeconomy.   The Science Researchers report a new reference genome for eucalyptus in … The new improved genome assembly generated through the JGI’s Community Science Program will help support targeted … help from researchers at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application
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Community standards and future opportunities for synthetic communities in plant–microbiota research
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Scaling Up Existing Skill Sets
… Over the course of the summer, the JGI-UC Merced Genomics Internship paired six UC Merced students with seven JGI researchers for bioinformatics internship opportunities in … to pursue this path and hopefully will be part of such a highly motivating and collaborative research environment …
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Defining a Pan-Genome for Antarctic Archaea
… Haloarchaea flourish in hypersaline environments, and researchers are interested in learning how these microbes … applications. The work has been enabled through the JGI Community Science Program (CSP) . Cavicchioli and his … generally have a primary replicon (chromosome) that is highly conserved and secondary replicons that are highly …
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Cultivating Symbiotic Antarctic Microbes
… are symbionts and not free-living organisms. The Science Researchers employed multiple microbiology and ‘omics … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … superphylum of extremophilic archaea first outlined by JGI scientists and their collaborators in 2013. While most …
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A Plant Root Atlas for Tracking Developmental Trajectories
… Cell and provides a community resource that could help researchers track cell development and how they determine … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … on single-cell and spatial transcriptomics technologies. JGI Science Programs Deputy Axel Visel provided a broader …
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Leo Baumgart
… Dr. Baumgart joined the DOE Joint Genome Institute in 2018, following his doctoral research in synthetic biology … binding sites and which has been applied to a wide range of JGI user science projects spanning bacteria, fungi, and … et al. "Supporting FAIR Scientific Workflows with the JGI Analysis Workflow Service (JAWS)." In 2025 IEEE …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex sugarcane genome . The Science Most species … the highly polyploid sugarcane, an international team of researchers has successfully assembled a first monoploid … polyploid sugarcane genome now underway as part of the JGI Community Science Program (CSP), a critical factor in …
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Cell-free styrene biosynthesis at high titers
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