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Viruses Reprogram Cells into Different Virocells
… infected by viruses undergo metabolic reprogramming. The Science If it looks like a duck and quacks like a duck, so … outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … part by the  Facilities Integrating Collaborations for User Science (FICUS) collaborative science initiative between …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … carbon from the atmosphere and keeps it in the deep ocean. With genomic samples collected before, during and after The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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How Filamentous Fungi Sense Food
… networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the University of … a job site for a task that requires a flathead screwdriver with a full toolbox including Phillips and specialty … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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The More the Merrier: Making the Case for Plant Pan-genomes
… plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … For the study, partly enabled by the JGI’s  Community Science Program , the team generated reference genomes for  …
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Jeremy Schmutz
Mr. Schmutz’s involvement with the DOE Joint Genome Institute dates back to 1997, when … Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … analysis at HudsonAlpha. … Jeremy Schmutz is the Plant Science Program Head at the JGI. Click to learn more about …
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Enlarging Windows into Understanding Gene Functions
… encoded in the genome sequence is part of the integrative science mission of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … workflow that reduces the time and cost associated with this purification step, and Baumgart continued and …
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Gene Expression: From On-Off Switch to Dial
… gene expression helps identify variants in yeast genes. The Science Scientists have developed a more nuanced library … published in the  Proceedings of the National Academy of Sciences (PNAS), offers more ways for scientists to explore … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Computationally Classifying Fungal Lifestyles
… on sequenced fungal genomes to classify gene families. The Science As a proof of concept, researchers developed an … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … . This work was enabled in part through  JGI’s  Community Science Program (CSP) , as several approved proposals have …
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Streamlining Regulon Identification in Bacteria
… technology could speed up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part …
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Better Genome Editing for Bioenergy
… to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility. Y. lipolytica is a tantalizing … of researchers sought to disrupt every gene in the genome with CRISPR-Cas9 in order to interrogate each one’s …
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Cataloging the Microbes that Manage the Health of River Systems
… on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a … points to the information. The team harnessed a community-science program to collect samples from across the country … of water help regulate. However, the microbes also interact with compounds like fertilizers and microplastics that might …
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) …
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