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JGI-UC Merced Interns Share Their 2021 Experiences
… virtually with JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in … the previous year and continue working on their research project! The JGI-UC Merced internship program was founded in …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, to understand how … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
In a recent  Nature Genetics paper , researchers focused on the full composition of genes, or pangenome, of the model … plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. Department of Energy (DOE) … Energy operated under contract no. DE-AC02-05CH11231. This project received funding from the European Research Council …
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From Competition to Cooperation
Tracking evolution of symbiotic lifestyles across multiple fungal lineages. … of plant-host and mycorrhizal-fungal interactions. … The project was funded by the U.S. Department of Energy Joint … the European Regional Development Fund and the Plant-Microbe Interfaces Scientific Focus Area in the Genomic …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years … Change’ (SPP 2237), and grant 410739858 in the frame of the project CharMod to K.v.S., as well as RE 1697/16-1 (CharMod) … work was further supported by Austrian Science Fund (FWF) project 10.55776/P34181 to A.H. The work (proposal: …
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Special Initiatives & Programs
Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … resources for genomic research and sequence-based science.  Projects include de novo generation of genome data, … Length of stay depends on the complexity of the project being considered and availability of data and other …
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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
This is the third and final episode of our series on a giant metagenome assembly from Wisconsin’s Lake … the specialized software and supercomputers behind this project. But every part of this project depends on lakewater samples — so this episode is a …
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A Collaboration to Improve Plant Genome Annotations Across Species
Joint Genome Institute works in partnership with the HudsonAlpha Institute for Biotechnology, which specializes in … the JGI Plant Gene Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research … – in over a dozen plants. To learn more about the project, HudsonAlpha’s Research Communication Manager Sarah …
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Ian Blaby
Joint Genome Institute, where he leads three groups focused on HTP DNA design and assembly, strain engineering and … development/data analysis for synthetic biology and functional genomics. Prior to joining the JGI, he was a group lead … 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, …
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Viruses Reprogram Cells into Different Virocells
But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … infections cause significant metabolic changes in marine microbes, the answer is no. They refer to the infected … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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JGI on the 2020 Highly Cited Researchers List
Congratulations to the 2020 Highly Cited Researchers at the … Jeremy Schmutz Susannah Tringe Tanja Woyke Below are a few projects each of these researchers were involved in, … genomes generated from environmental samples around the world. Much of the data had been generated from samples …
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Training the Next Generation of Talent
Office of Science user facility, Keedrian Olmstead was back on campus at the University of California, Merced to start … challenges UC Merced graduate students with individual projects at the DOE JGI that provide hands-on experience in … Olmstead worked with postdoctoral fellow Ben Cole on a project involving bacteria in Arabidopsis plant roots. At …
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