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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger … was really happening,” recalled Sean Gallaher, a research scientist in Sabeeha Merchant’s lab and first author of the … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
Back in 2011, JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State …
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Project Management Office
The JGI Project Management Office carries out a number of activities to facilitate world-class science. PMO works with users, JGI scientists and technical staff to onboard users and guide …
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A Complex Confection Decoded: Sugarcane Reference Genome
… reference quality genome and now crop researchers can work toward advancing sugarcane biotechnology. The Science … cultivar R570 has been  published in  Nature by an international consortium. With the genetic code of … to future environmental conditions. Additionally, insights from the genome could help scale sustainable sugarcane …
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Cataloging the Microbes that Manage the Health of River Systems
… researchers describe a dataset of microbial genomes sampled from rivers covering 90% of the watersheds in the … United States. They also provided multiple access points to the information. The team harnessed a community-science … from the National Microbiome Data Collaborative. The published river microbiome datasets are also available …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … tools, allows  Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … was  recently published in  Nature Communications by an international, multi-institutional team. The work was a …
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A Natural Mechanism Can Turbocharge Viral Evolution
… how a fundamental mechanism of evolution allows microbes to adapt to changing environments. The Science The first … and industry applications. Summary In their recently published Nature Communications article , the team used … and viral genomes, as well as genomes sampled all at once from the same environment, called metagenomes. Why? Simon …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… evokes images of fanboats skimming over swamps, while alligators peer through the waters and clouds of insects hover … Florida, they encompass a wide range of ecosystems ranging from wetlands to tree islands to cattails. In 2018, the US … said Jonathan Benskin, who teaches the A-Level Advanced International Certificate of Education (AICE) Biology class …
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse … with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows …
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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy and perenniality. The Science A … genomic tools, allows Miscanthus to both inform and benefit from breeding programs of related candidate bioenergy … was recently published in Nature Communications by an international, multi-institutional team. The work was a …
Learn more
A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. The … and what they do. Summary The name PhycoCosm stems from the Greek phykos , meaning seaweed. Seaweeds are algae, … are available, a user can also analyze gene expression from published experiments; study DNA methylation, which gives …
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Matt Blow
… the User Support Analysis group. He received his Ph.D. from the Wellcome Trust Sanger Institute and Cambridge … editing and cancer genetics. Dr. Blow carried out postdoctoral work at LBNL, where he worked on computational and … genomes. When he joined the JGI, he worked as a project scientist and then as a research scientist on projects to …
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