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Picking Up Threads of Cotton Genomics
… the simplest cotton genome ( G. raimondii ) several years ago. Studying the cotton genomes provides breeders … lineages had dispersed and diversified over a million years ago, their genomes were “remarkably” stable. “We … will derive benefit from this high impact science for years to come,” said Don Jones, who handles variety …
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JGI Early Career Researchers Featured in mSystems Special Issue
… the authors who offer perspectives on what the next five years of innovation could look like. In one article, … studying virus-host dynamics in nature. In the last few years, mapping the planet’s viral diversity has advanced …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… biofuel feedstocks with less fertilizer. For millions of years, underground fungi have lived in symbiosis with plant … Serrano said. This team quantified the expression of over 12,000 fungal genes, in addition to associated plant genes.  …
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Pinning Down a Piece of Photosynthesis
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New Research Sheds Light on Diversity in the Deep Sea
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Igor Grigoriev
… early evolution of symbiotic traits. Nature Commun . 11(1):5125. Krizsán et al (2019) Transcriptomic atlas of mushroom … to expand the fungal tree of life.  Nature Microbiol. 3(12):1417-1428. Haitjema et al (2017) A parts list for fungal … mosaicism and the fate of nucleomorphs.  Nature . 2012; 492: 59-65. Floudas D et al. The Paleozoic origin of …
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Olpidium, The Key to the Origin of Terrestrial Fungi
Olpidium zoospores remained largely untouched until seven years later. In 2018, as members of the ZyGoLife consortium … to the sequencing effort by the JGI and ZyGoLife in recent years. With the much more extensive taxonomic and genetic … diversification events occurred approximately 650 million years ago, and that the first terrestrial fungi predate the …
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The More the Merrier: Making the Case for Plant Pan-genomes
… more than once, and these events took place a million years apart: the individual with a maternal  B. distachyon parent (D plastotype) some 1.4 million years ago (Mya), while the S plastotype was a more recent … anticipated with only minor gene loss even after a million years.” Reference genomes for  B. distachyon ,  B. stacei …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… aquifer in 2007 to achieve this goal. In less than four years, parts of the shallow portions of the groundwater were … remain.  To identify the microbes involved in the early years of the biodegradation process, researchers collected … of Energy operated under Contract No. DE-AC02-05CH1123. Partial support was provided by the National Center for …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… the JGI DNA Synthesis Science Program, which started in 2012, and what they’ve discovered through their … papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI … of the DNA Synthesis Science Program by applying to the year-round Community Science Program Functional Genomics …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… outcome of the innovative research  being proposed by this year’s CSP investigators,” said Tanja Woyke, Deputy Director …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Science Program proposal that Martin submitted in 2012. At that time, the field had surveyed many different soil … this way was challenging, according to Martin. “Twelve years ago, when we mapped the first sequenced RNA from the … Fungal Genomes project changed that. This is a multi-year project in collaboration with the JGI to sequence 1000 …
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