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A Collaboration to Improve Plant Genome Annotations Across Species
Atlas in  Nucleic Acids Research . The project spans 15 years and involves more than 17 research groups. The team … Having a better handle on the gene function helps identify the molecular targets for plant improvement. … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted from 70 full … submissions based on 92 letters of intent. Additionally, 40 percent of the proposals were submitted by researchers … as he had an accepted new investigator proposal last year, and he noted that the experience proved beneficial for …
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… comprehensive learning experience.” Over the course of the year, she and other JGI staff conducted several real-time, … publication in a reputable scientific journal. It was gratifying to see the empowerment displayed across each of their … considers the experience the highlight of her past year’s work at the JGI. As the students look forward to …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… “Being a JGI-UC Merced Intern during the summer of my first year as a Ph.D. student significantly, and positively, … defends her dissertation in May. Since its inception in 2014, more than 20 UC Merced students have contributed to the …
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10 From JGI on the 2019 Highly Cited Researchers List
… were involved in that were reported on over the last year: Kerrie Barry and Jeremy Schmutz worked with a …
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Does time matter? Intraspecific diversity of ribosomal RNA genes in lineages of the allopolyploid model grass Brachypodium hybridum with different evolutionary ages
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… to analyze samples from one experiment. Starting a  few years ago, researchers can request quantitative SIP analysis … and Reusability) for data reuse.  In the last year, JGI’s user community has helped propel multiple … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the people …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to … served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the development of … no. iyac146 DOI: 10.1093/genetics/iyac146 Gordon, et. al. 2020 Gradual polyploid genome evolution revealed by a …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… of Duisburg-Essen (UDE), Germany with the aim of intensifying collaborations in the fields of genomics, structural … space that has resulted in many impactful papers in recent years, but are also looking forward to jointly expanding … at the University of Duisburg-Essen in Germany in 2024 and 2025.  Participants from the UDE were Alexander …
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Matt Blow
UK and Lawrence Berkeley National Lab … Bowers et al. 2024. scMicrobe PTA: Near Complete Genomes from Single Bacterial Cells bioRxiv , 2024.01. 30.577819 2. Dicenzo et al. 2022. DNA Methylation in  … in bacterial gene regulation. Nature methods 18 (12), 1499-1505 Shulse et al. 2019. Engineered Root Bacteria …
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The JGI Data Portal: Improving User Experience
… of focus and data and computational needs. Over its 23-year history, JGI has produced more than 13 petabytes of …
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Igor Grigoriev
… deconstruction by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes … microbiome diversity and function.  Nature Microbiol. 7(9):1419-1430. Ye et al (2022) The role of zinc in the adaptive … Natl Acad Sci U S A. 118(18):e2019855118. Miyauchi et al (2020) Large-scale genome sequencing of mycorrhizal fungi …
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