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The Expanding Universe of Methane Metabolisms in Archaea
… of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data provided by the other … methanogenesis is one of the oldest metabolisms, with the first traces possibly at ~3.5 Gy (billion years),” Borrel …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… are lending their expertise in developing and managing public viral genomics resources such as analytical tools and data repositories to … by NIH Common Fund grant 1U24HL175772-01. This is not the first time Kyrpides and his colleagues have demonstrated how …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… roles in carbon and other nutrient cycles. “This is the first study to take a more global look at giant viruses by … JGI’s  Microbial Program . The team mined more than 8,500 publicly available metagenome datasets generated from … their unicellular hosts,” Schulz added. The work also used resources of the  National Energy Research Scientific …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… genes. The data from that study is now used across California State University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear from CSU San Marcos Professor Matt …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… of Texas (UT) at Austin, the HudsonAlpha Institute for Biotechnology (HudsonAlpha), and the U.S. Department of … The knowledge gained from 8X switchgrass is a valuable resource towards the effort to generate climate resilient … use existing data as well as generating additional genomic resources to address long-standing evolutionary ecological …
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David Goodstein
… and semiconductor equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building … 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the … plant genomics.      Nucleic Acids Research 40, D1178. Publications … Scientific Advisory Board member, InterMine …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my first publication and it feels so rewarding,” Wint said. For …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … alternative fuels from plants is the high cost and resource requirements of processing these sturdy materials, … — from these environmental samples,” said Matthias Hess, first author on the paper and now an associate professor and …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … alumnus of the JGI-UC Merced Genomics Internship Program, first sampled the area in summer 2016.  She described the … Research and Higher Education at Ensenada (CICESE) in her first microbial ecology paper in the journal PLoS One . …
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Katherine Louie
… to develop the metabolomics program, and in 2019 became Platform Lead where she manages metabolomics production for community sequencing projects and heads R&D efforts to … Sci Rep. 2013;3: 1656. … Education … Selected Publications …
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The exceptional form and function of the giant bacterium Ca. Epulopiscium viviparus revolves around its sodium motive force
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Evolution of a Fungal Gene Expression Regulator
… ways to protect poplar and other crops being considered for bioenergy feedstock development. Summary With the aim of … no. DE-AC02-05CH11231. The Georgia Advanced Computing Resource Center (GACRC) and Georgia Genomics and … University of Georgia provided sequencing and computational resources, respectively. This work was supported by the …
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