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Tanja Woyke Elected to American Academy of Microbiology
… genetic material of uncultivated microbes and link their genomes to the roles they play in the environment. One example, published in Nature , applied single-cell sequencing to decode genomes of bacteria and archaea from previously understudied …
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JGI@25: Following Fungi that Pry Apart Plant Polymers
… kinds of supplies in the quest to break down plants.  In 2016, her team leveraged transcriptomics and other assays to … there’s opportunities for borrowing and porting parts from nature — enzymes, transporters, pathways — into microbes …
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How To Use Our Systems
… understand our broader community of users. Each portal lists a contact, or you can reach out via the form on our …
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First Monoploid Reference Sequence of Sugarcane
… Sorghum genome serves as a reference for the highly complex … been hampered by the crop’s highly polyploid genome, which makes sequencing and assembly of the genome extremely … of the gene-rich part of the sugarcane genome. Reported in Nature Communications , their approach relied in part on …
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A Sorghum Pangenome Opens More Doors to Discovery
… decades of technological development, dozens of reference genomes and thousands of resequenced sorghum varieties, a … a pangenome resource for sorghum , recently reported in Nature . “We wanted to build a resource that demonstrates … long been one of the JGI’s  Flagship Plants , on the short list of plant genomes deemed most important to DOE mission …
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Nigel Mouncey
… Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … to build and position JGI as a leading integrative genome science user facility.  In addition to serving as JGI … of Energy biology programs, and represents the Joint Genome Institute at national and international forums. …
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A 34K SNP genotyping array for Populus trichocarpa: Design, application to the study of natural populations and transferability to other Populus species
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Natural Variation in Lignin and Pectin Biosynthesis-Related Genes in Switchgrass (Panicum virgatum L.) and Association of SNP Variants with Dry Matter Traits
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Altered Expression of Two Small Secreted Proteins (ssp4 and ssp6) Affects the Degradation of a Natural Lignocellulosic Substrate by Pleurotus ostreatus
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of … the boundaries of the Plant, Fungal, Algal, Microbial, Metagenome, Metabolomics, Secondary Metabolites, and DNA …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… of East Anglia, leads this effort to understand what makes polar photosynthesizers tick. He’s working with … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the diatom …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… sequencing from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … changing salinity of the environment. ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) … conducted by the U.S. Department of Energy Joint Genome Institute (https://ror.org/04xm1d337), a DOE Office …
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