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A Complex Confection Decoded: Sugarcane Reference Genome
… most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for the … by an international consortium. With the genetic code of sugarcane, researchers were able to map the location of … sugar and biomass. Additionally, the team was able to identify a major locus (Bru1) that durable resistance to brown …
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Atif Shahab
… Since 2012, Mr. Shahab has led the development of an integrated platform for tracking JGI's sequencing … tracking, and enables efficient analysis and reporting of sequencing projects and their status. Mr. Shahab has … BS in Electrical Engineering, University of New South Wales, Australia; MS in Computer Science, …
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The Expanding Universe of Methane Metabolisms in Archaea
… issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis … two metabolic pathways “Up to this point, most phylogenomic trees have relied on only one korarchaeotal representative,” …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome … in developing and maintaining the JGI’s  Integrated Microbial Genomics and Microbiomes (IMG/M) system. The …
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New Research Sheds Light on Diversity in the Deep Sea
… Microbial communities living near hydrothermal deep-sea … get any sunlight, and yet they still support a unique array of microorganisms adapted to living in extreme conditions. … This means they hold clues for understanding how life thrives in extreme environments. They also produce a …
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Virus Discoveries that Keep Getting Bigger
… single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … then co-culturing isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used … host cells harboring them — could be a future option to discovering giant viruses. Further, single-marker gene based …
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MGM Workshop at Fisabio Summer School
… June 24-28: Module 2/Microbial Genomics & Metagenomics Workshop The workshop is addressed to students and professionals of biology, biomedical research, the health … fields who are interested in learning and sharing concepts, tools and research results in genomics, metagenomics and the …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of … Soil Microbiome SFA. She serves as Secretary within the Microbial Ecology Section of the Ecological Society of … biogeochemical cycles in soils and sediments and plant-microbial interactions in crops. He has been a PI or Co-PI …
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Pinning Down a Piece of Photosynthesis
… By studying the structure and function of a cyanobacterial protein, researchers have new insights … domain of unknown function.  First, they looked across the tree of life, doing a very complex CTRL+F search for this domain, … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel secondary … have uncovered genomes for just a small fraction of Earth’s microbial diversity. Because most microbes cannot be … genomes available at that time. “Looking across the tree of life, it’s striking how many uncultivated lineages …
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A survey of computational approaches for characterizing microbial interactions in microbial mats
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria … analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … Foundation (18- 25706S and 20-02022Y), by the Ministry of Education, Youth and Sports of the Czech Republic …
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