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Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the … in bacteria. Since 2016, he has been the lead of the User Support Analysis group. The group performs custom analysis … transcriptome, epigenome and other functional genomics datasets generated by JGI user science projects. … BS in …

JGI user programs and help advocate for programs that will support the emerging careers of ERCs. She’s also interested in developing or improving bioinformatics tools that can help with dataset analysis, as well as how they can be shared with and …

… reaching out to many researchers with the hope of getting support for a research project for his class of 18 juniors.  … through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out …

… of fungi, by lifestyles. The machine “learned” to identify data generated in part through the 1000 Fungal Genomes … fungal lifestyles of saprobes and pathogens based on the data provided. In this proof of concept test, the team … was over 95% successful at classifying the fungal genomes Support Vector Machine (SVM)-based prediction of lifestyle …

By mining more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which includes  IMG/VR (for Virus)—for the … Research Scientific Computing Center (NERSC) , which is supported by the Office of Science of the U.S. Department of …

… variation in its progeny. The study’s transcriptomic data also identified many genes potentially important for … even Marvel’s Brock/Venom would envy. … This work was supported by an intramural seed grant (IGSP 2008001) to DA, … No. 1011101 to E.S. and J.M.L. … Fungus Genome on MycoCosm data portal … Alga Genome on PhycoCosm data portal … …

… the microbes that play roles in the methane cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  was published in the … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …

Database provides details on river microbes in 90% of US … Science In a recent Nature paper , researchers describe a dataset of microbial genomes sampled from rivers covering … could work across platforms. … This work was partially supported by awards from US Department of Energy (DOE) …

National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation … these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the … please visit  energy.gov/science/office-science . … IMG/VR data portal …

The Impact Healthy forests store carbon, filter water, and support all kinds of plants and animals, but with climate … — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …

… is one of the largest producers of environmental genomics data and has a strong reputation in the community,” said JGI … Officer Kjiersten Fagnan of the upcoming event. “The tools we use to process and analyze these data are diverse and porting these codes to GPUs present …

The PhycoCosm data portal allows anyone to freely investigate the genes of … more than 100 algal genomes, compare them, and visualize supporting experimental data. The Impact Algae are important … in algae. PhycoCosm joins other online data portals and tools created by JGI researchers, including the Integrated …