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… capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational … computationally enabled approach to analyze complex genomic datasets. [Download PDF]   FY 2014 Overall Sequencing …

… gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic Acids Research , … Collaboratory (SMC) has launched as an interactive public database for the research community. With more than 13 … using multiple commonly used sequence analysis tools is a means of expediting BGC and biosynthesis …

… his team then linked those species-level observations with data on microalgal communities across different ocean … from pole to pole, using metatranscriptome and metagenome data from the JGI. With multiple threads of evidence showing … which explores genomics of algal diversity and biology to support basic science as well as bioenergy and …

… has looked for DGRs in a broad range of publicly available datasets. They’ve discovered that DGRs are not only … level. Scientists might then harness them as molecular tools for research and industry applications. Summary In … works to keep throwing the dice. There’s some evidence to support the idea. Study coauthor Stephen Nayfach, a JGI …

… An improved genome assembly to support targeted tree breeding for the bioeconomy.   The … having genomic resources to develop molecular breeding tools has been critical. The new improved genome assembly … the bioeconomy. Summary In the past decade, many breeding tools for eucalyptus have relied on the E. grandis reference …

… Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area … most advanced integrative genome science capabilities in support of the DOE’s research mission.     Director's …

… Using the IMG/M data portal, researchers have identified a virus protein … soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) Joint … Northwest National Laboratory (PNNL), with additional support from the SLAC National Accelerator Laboratory. After …

… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, … understand their roles and potential impacts. The work is supported by NIH Common Fund grant 1U01DE034196-01. The JGI … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …

… identified other bacteria and microbial processes that support PCE biodegradation. The results demonstrate that it … , they were able to analyze the resulting metagenomic data. (Data from the project are available on the  JGI Genome … ), a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of …

… Berkeley National Laboratory (Berkeley Lab). “These data can also be used for machine learning and artificial … capture the vast nature of fungal diversity. Examining databases like MycoCosm , the JGI’s online fungal genomics … artificial intelligence to genomics. The comparative datasets that revealed evolutionary patterns are now …