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JGI@25: Roots of a Mutualist Relationship
… 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … a symbiotic relationship with the poplar, a JGI Flagship Genome and the first tree to have its genome sequenced. …
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Gene Expression: From On-Off Switch to Dial
Compared to the traditional way, which leverages an all-or-nothing approach to expression, scientists can now opt for … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … that this singular library synthesized by JGI was versatile enough for use in multiple applications. This …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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Learning to Look
… by scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … tool Roux and his colleagues developed first worked on a reference dataset that included genome sequences known to be … said virologist Mart Krupovic of the Institut Pasteur, one of the study co-authors and an expert on inoviruses. …
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Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium
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Tracking the Origins of Methane-Producing Microbes
… on the global carbon cycle. All methanogenic archaea use one of three pathways for methanogenesis: hydrogen-dependent and CO2-reducing, or hydrogenotrophic (most common); methylotrophic; and, acetoclastic. … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one “petabase” – a quadrillion nucleotide bases of DNA … will likely be achieved in the next three years, if not sooner!” Click here to download a copy of the Strategic …
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Trent Northen
Northen’s research is focused on using metabolomics to link genomes with environments to understand how webs of microbes … Energy Leadership … Novak, V, et al. Reproducible growth of Brachypodium in EcoFAB 2.0 reveals that nitrogen form and … metabolomic and transcriptomic survey of Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. …
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Exploring Possibilities: 2022 JGI-UC Merced Interns
Clement Coclet and Simon Roux Tyrome Sweet and mentor Jonelle Basso Yumary Vasquez and mentor Juan C. Villada … graduate degree, then maybe like think about doing a PhD or not in the future.  Feng Yu : So for me, previously I had I … concern before I started my internship was whether I had enough experience to make really good contributions to the …
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Ray Turner Completes Last Tour of Lab Duty at JGI
For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, 2020, that all changed. Ray’s … ride to Berkeley from the Peninsula is still good. “I noticed right away,” said Ellen Ford about Ray’s personal …
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Forming Scientific Connections and Building Community
This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … mentors, and their summer projects. Each intern also mentioned what they loved about their internship. Efosa … Mentors: Yi Zhai & John Vogel Project: Characterization of Brachypodium distachyon root transporters in …
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Covariation of hot spring geochemistry with microbial genomic diversity, function, and evolution
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