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Applying Viral Genomics Expertise to Understanding the Human Virome
… the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility … , head of the JGI’s  Microbiome Data Science , leads one project with JGI colleagues Antonio Camargo and Simon …
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Fishing for Novel Cellulose Degraders
… single-cell genomic approach to bioprospecting. The Science One of the most vital pieces of equipment for fly fishing is … by Tanja Woyke at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … tested the approach on bacterial laboratory models to set a reference for its performance, and then applied it to …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), … campuses with this being our largest and most successful one. It’s proven to be a really good model for us that we … program cofounder and Applied Math professor at UC Merced, noted that the part that was the most rewarding of all the …
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Publication Policy
… and any other contributions, such as assembly, analysis, annotation, verification, creation of genome browsers, etc. The users, collaborators, and JGI … of data produced at the facility, provided this is done in a timely fashion. The publications resulting from …
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… aren’t interested in waiting decades to develop new crops. One example is an ongoing collaborative effort to improve … and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab), has produced a high-quality reference sequence of the complex switchgrass  genome using …
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User Advisory Committees
… All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National … and strategic objectives of the microbial and metagenome programs. The committee serves as the program's key …
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Virus Discoveries that Keep Getting Bigger
… Nucleocytoviricota , these giant viruses boast larger genomes than many bacteria. Until recently, understanding of … viruses. This review highlights four of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference genomes to search for giant viruses in metagenomic …
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JGI on the 2020 Highly Cited Researchers List
… among those recognized by Clarivate Analytics as “true pioneers in their fields over the last decade, demonstrated by … part of a consortium that  released a very high quality reference genome sequence of green millet ( Setaria viridis ) in  … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that aminotransferase enzymes have evolved mix-and-match … look at how this enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the … as well as the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To … it to usable organic compounds. However, no microbe works alone. Archaea, bacteria, and viruses all operate in concert …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… Functional Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA … the University of California, Davis. “The work with JGI was one of the first things we actually started doing when … first. Prospective users are always welcome to contact one of us about possible proposals if it’s different from …
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Eelgrass Proves to Be Much Younger Than We Thought
… years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … populations. Summary Eelgrass is unique in that there are not many species able to occupy the regions where eelgrass … form of another species, so the scientists had to use the genome itself.   Approximately 67 million years ago, the …
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