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JGI@25: Expanding Metagenomics to Capture Viral Diversity
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … rarely grow well in environmental samples brought back to a lab, because they often need unique conditions and a … including 3,908 isolate reference DNA viruses and 264,413 computationally identified viral contigs. Since then, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research … (VEGA) Symposium , which will take place later this year in Berkeley, Calif. Convening the “viral ecogenomics” …
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DOE JGI Interns Share Their Summer Experiences
… the opportunity to spend time out in the field, work at the lab bench, and also do some computational analyses at their … were two U.S. Department of Energy Science Undergraduate Laboratory Internship (SULI) Program students. Sharon Cao …
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Nikos Kyrpides
… of Illinois at Urbana-Champaign and at Argonne National Laboratory. Dr. Kyrpides’ research focus on Microbiome … Researcher (Biology & Biochemistry) (2014-2023) Lawrence Berkeley National Laboratory Outstanding Scientific … Foundation (2012) Outstanding Performance Award, Lawrence Berkeley National Laboratory (2007) Scientific Advisory …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific Research and Higher … Dr. Tanja Woyke and additionally mentored by members of her lab – especially Dr. Robert Bowers who also greatly … followed. I especially want to emphasize the inclusive, collaborative working environment I have consistently …
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A Collaboration to Improve Plant Genome Annotations Across Species
… (JGI)*, a national user facility located at Lawrence Berkeley National Laboratory, and add additional gene function descriptions. … virgatum ) experimental data. Sarah:  How important is collaboration in the big data and plant science community? …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In … Nucleic Acids Research , the Secondary Metabolism Collaboratory (SMC) has launched as an interactive public … (JGI), a DOE Office of Science User Facility located at Berkeley Laboratory, built off past experience in developing …
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iPHoP: A Matchmaker for Phages and their Hosts
… new program called iPHoP (pronounced “eye-pop”,  freely available online ). It combines and evaluates multiple … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, aimed to streamline a process they often took …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … challenges. In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to … diversity, much of which remains unknown and uncultured in laboratories. Other firsts followed. The next year, the JGI …
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Introducing New Members of the JGI User Executive Committee
… analyzed use-restricted data without contacting the lab that generated that data,” he said in his candidate …
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New Research Sheds Light on Diversity in the Deep Sea
… conditions — like temperature, pH levels or the availability of certain nutrients — influence the makeup and … a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, contributed metagenomic sequencing to the study …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… a number of notable achievements that showcase our collaborations and capabilities to enable great science that … of the microbes found in any environment can be grown in a laboratory — and rumen microbes are no exception. Back in … paper and now an associate professor and head of the Hess Lab at UC Davis. “It was a really huge effort in tool …
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