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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his … Institute, a Senior Scientist at Lawrence Berkeley National Laboratory, and an Adjunct Professor of Plant and Microbial … University of California, Berkeley, CA … Lankiewicz et al (2023) Lignin deconstruction by anaerobic fungi.  Nature …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
In honor of the JGI's 25th anniversary in 2022, we have … a number of notable achievements that showcase our collaborations and capabilities to enable great science that … the JGI Flagship Plants . Since 2007, the JGI has been working on identifying switchgrass genes related to biomass …
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Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
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Transcriptomic Data Sets for Zymomonas mobilis 2032 during Fermentation of Ammonia Fiber Expansion (AFEX)-Pretreated Corn Stover and Switchgrass Hydrolysates
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have … a number of notable achievements that showcase our collaborations and capabilities to enable great science that … in a laboratory — and rumen microbes are no exception. Back in 2011, JGI-supported researchers published a paper in …
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Metabolomics
… strengthens -omics technologies at the JGI by identifying the actual molecules present in an environment that influence system behavior.  Through this identification, …
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User Advisory Committees
All staff members of the US Department of Energy (DOE) Joint Genome Institute (JGI) commit to Lawrence Berkeley National Lab’s (Berkeley Lab’s) core values, which guide the …
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JGI Hosts GPU Hackathon in May
WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit (GPU)-based … JGI is partnering with NVIDIA and Oak Ridge National Laboratory (ORNL) to make sure our computational workload … per team. Participants will be expected to have some experience with OpenACC or CUDA – links to training …
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I-Min (Amy) Chen
Dr. I-Min A. Chen received her Ph.D. in Computer Science. Her … tools for scientific applications developed at Berkeley Lab. Dr. Chen is currently the Microbiome Computational … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner …
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JGI Portals
… and require constant developments to meet the ever-changing demands of our users. … Download plant, algal, fungal … genomic databases and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to … for comparative analysis and annotation of all publicly available genomes from three domains of life, in a uniquely …
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
… enabled by the JGI DNA Synthesis Science Program. Fashioning DNA outside a cell is key to interrogating what genes … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), comes in. The JGI is uniquely … and construction, providing a unique resource for the international community and fostering academia-industry …
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Ancient Algae Reveal Secrets of Plant Evolution
… land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes … . Published  May 2024 in  Nature Genetics by an international research consortium led by the University of …
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