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SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
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Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … interest. Nature Methods paper coauthor Lee did the initial development of a streamlined workflow that reduces the time … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … (up to 120 sequencing machines at maximum) maintained by a workforce that numbered more than 100 at its peak, all the … years ago. For JGIers, the moving process began in 2017 with annual one-day cleanups. During those days, they were …
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Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
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Fungus Fuels Tree Growth
… a potential biofuel feedstock.     The Science The fungus  Mortierella elongata enjoys a dual lifestyle; it can … root cells. The fungus is almost always found among and within poplar trees, and in an effort to understand its … were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . …
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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… UDE familiarized themselves with the research programs and user facilities at Berkeley Lab. Commenting on the visit, JGI Director Nigel Mouncey expressed enthusiasm about the potential of this collaboration stating, “We … individual workshops. Of common interest is the method development to study active sites or single cells in their …
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How to Target a Microbial Needle within a Community Haystack
… targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first … fixation protocols were also tested as part of the method development, and researchers found that ethanol treatment …
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Plotting a Model for Virus-Host Warfare Deep Below Ground
… are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … and dominant populations in oxygen-poor environments without oxygen deep below ground. These archaea fix carbon … Berkeley National Laboratory (Berkeley Lab). To learn more about how microbial populations respond to virus infections, …
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Ultraconservation identifies a small subset of extremely constrained developmental enhancers
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Plant Program
… With collaborative user projects, the JGI’s Plant Program … role in capturing carbon, detoxifying soils, interacting with other organisms, and adapting to environmental changes. The program lays the groundwork for sustainable solutions to current problems facing humanity. A …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard about the JGI synthesis grant during a presentation that … driven his lab’s focus on guide RNA library generation and development and its applications. “I moved to UC Davis in …
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