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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based … reservoir of natural products. Proc Natl Acad Sci U S A. 2021;118. doi:10.1073/pnas.2019855118 2. Murphy KM, Edwards … root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. Louie KB, …
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JGI announces 2024 New Investigator portfolio
… with DOE missions and from PIs who have not led any previously-accepted proposals — through the New Investigator call … for proposal submission is October 4, 2024, for inclusion in the December 2024 review. You can also find more information about the JGI’s various proposal calls here. …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… which microbes are present in a sample, to generate data about which organisms are active, and which microbes are … microbial ecosystems. These communities harbor tens of thousands of different organisms who all consume different … along these lines, all with the goals of better data reporting, improved collaboration, and more comparable …
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David Goodstein
KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of … across the plant kingdom. Nucleic acids research 51 (16), 8383-8401. JT Lovell et al., 2022. GENESPACE tracks … across multiple genomes.  eLife 11, e78526. Li et al., 2021.  Plant Pan-Genomics Comes of Age . Annual Review of …
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SNP Assay Development for Linkage Map Construction, Anchoring Whole-Genome Sequence, and Other Genetic and Genomic Applications in Common Bean
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QTL Mapping for Pest and Disease Resistance in Cassava and Coincidence of Some QTL with Introgression Regions Derived from Manihot glaziovii
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Expression quantitative trait loci mapping identified PtrXB38 as a key hub gene in adventitious root development in Populus
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Enlarging Windows into Understanding Gene Functions
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first … as tough as it has been 10 years ago,” he said. “We thought about reconstructing gene regulatory networks, understanding …
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JGI announces final round of 2022 Functional Genomics awardees
… functional genomics research from potential users who need help translating genomic information into … are accepted year-round; the next deadline is July 31. You can learn more about our Community Science Program here .  …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of … of genes known as biosynthetic gene clusters (BGCs.) As reported in the recent Database issue of the journal Nucleic … of the closest comparable database. … Dan Udwary talks about the Secondary Metabolism Collaboratory  … Browse BGCs …
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Matt Blow
Dr. Blow joined the JGI in 2009, and currently heads the User Support Analysis group. He received his Ph.D. from the … Medicago spp. Msystems 7 (1), e01092-21 3. Baumgart et al. 2021. Persistence and plasticity in bacterial gene … Prize studentship Editorial board member for Scientific Reports … Education … Selected Publications … Awards and …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence Berkeley National … researchers were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked … among other conditions. While scientists around the world were busy sequencing the human genome, an arms race …
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