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The JGI announces FY25 awardees for our Community Science Program Annual Call
… metabolic engineering and biocatalyst design will target sustainable energy solutions, focusing on lignocellulosic … bringing together diverse expertise to address complex scientific questions.”  Of these 18 scientists, eight have … nutrient cycling, and biogeochemistry.  You can learn more about this call, as well as our smaller-scale New …
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PhycoCosm Tutorial
… Learn more about PhycoCosm, the largest interactive collection of … tools developed by the Joint Genome Institute (JGI), a US Department of Energy Office of Science user facility at Berkeley Lab. Presented by Igor Grigoriev, …
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Jeremy Schmutz
… years, Mr. Schmutz has directed the JGI Plant Program, focusing on the organization of community driven science for … Genomes and DOE relevant cellulosic feedstocks. He provides scientific project management for the reference eukaryotic … Plant Science Program Head at the JGI. Click to learn more about the program's areas of focus, major initiatives and …
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A User-Centered Approach to Accessing JGI Data
… plant portal  Phytozome . Now the portal offers a way for users to more easily access public data sets through a … metadata’ across the files that are submitted by each scientific program,” he said. “If each kingdom submits the … current Data Restriction Policy requires that users know about the FY Funding Year, and the publication status in …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… health. Three DOE national labs had people and resources focused on three human chromosomes: Lawrence Berkeley National … researchers were studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked … Laboratory had teams studying Chromosome 19, which contains about 2% of the human genome. They were interested in genes …
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How to Target a Microbial Needle within a Community Haystack
… targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first … users in order to address pressing energy and environmental scientific challenges. …
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Better Living Through Bioenergy
… Pseudomonas putida to break down biomass and help bring about a more sustainable, biobased economy. They conduct research at the … Institute (JBEI) , a JGI partner and one of the four US Department of Energy Bioenergy Research Centers.  …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… As warm-adapted microbes edge polewards, they’d oust resident tiny algae. The cold polar oceans give rise to … other words, some like it hot; some do not. “We can think about the ocean, naively, as a sort of homogeneous medium. … moderate waters that have an average surface temperature of about 58° Fahrenheit (14° Celsius) — a cool intermediate to …
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DAP-seq Drives Robust Mapping of Gene Regulation
… deciphering the complex wiring behind a city’s power grid. Just as the flow of electricity controls when and where … from grasses to broccoli and trees like poplar, spanning about 150 million years of evolution,” said Leo Baumgart, … and adaptation. More specifically, it’s enabled several scientific discoveries that are key to understanding how to …
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JGI at the AGU Fall Meeting
… December 7   9:15am PT (online) Town Hall on the role of user facilities in accelerating research and tips for … proposals: Collaborate With a U.S. DOE User Facility: Learn About Available Expertise and Resources, Open-Call … proposal: Maximize Your Research by Harnessing Multiple Scientific User Facilities in One Proposal via FICUS …
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You Can Move, But You Can’t Hide
… identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in virtually all of … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… developed to help inform scientists and researchers more about the patterns and functions of environmental microbes. Researchers can use the tool to correlate protein annotations with ratios of … Diagram. The tool is hosted on the National Energy Research Scientific Computing Center’s (NERSC) SPIN environment and …
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