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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… Molecular biology has benefited from heat-stable enzymes derived from thermophiles, stabilizing the … the JGI’s Community Science Program , the team used metagenome assemblies, transcriptomes and single amplified …
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Defining a Pan-Genome for Antarctic Archaea
… Analysis of haloarchaeal metagenomes broadens understanding of Antarctic biogeography. … genomic variation in haloarchaea, they also characterized metagenomes (collections of partial genomes) from six … global biogeochemical cycles, and possibly cold-temperature enzymes for biotechnological use. Summary Conditions such as …
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Soil virus offers insight into maintaining microorganisms
… impact on the microbial communities within soil. Using metagenomics, scientists can shed light on hidden components, … three domains of life.  Using the IMG suite, JGI retrieved 142 of the GH75 AMGs, which encode enzymes that break down chitin. A protein tree was then …
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Learning to Look
… use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 … in 3,609 (6 percent) of the 56,868 microbial genomes and 2,249 of the 6,412 (35 percent) metagenomes mined for this …
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Uncovering Novel Genomes from Earth’s Microbiomes
… expanding the known diversity of bacteria and archaea by 44%, is now available and  described November 9, 2020 in  … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of …
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A Collaboration to Improve Plant Genome Annotations Across Species
… sets, such as sorghum internode time course data from 4 different genotypes by Dr. John Mullet; Dr. Tom Juenger … additional biological information to an average of 40 percent of genes across Gene Atlas plants. Comparing …
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A Natural Mechanism Can Turbocharge Viral Evolution
… sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and is … was supported by the Australian Research Council (DP150100244) and the Australian Antarctic Science program (project …
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Pinning Down a Piece of Photosynthesis
… a similar region —  a domain of unknown function, DUF2470. In the world of proteins, a domain of unknown function … into focus. Blaby-Haas and her team hypothesized that DUF2470 was key to iron metabolism, and renamed it to Domain …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… (already known as CRISPR) that came up in her team’s metagenomic  samples . While Banfield continued exploring the … the largest component of a genome sequence, accounting for 45% of the human genome and 50-80% of certain plant genomes …
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The Expanding Universe of Methane Metabolisms in Archaea
… Metagenome-assembled archaeal genomes provide new insights … metabolisms is “vastly underestimated.” In the March 4, 2019, issue of Nature Microbiology , they mined the … present in archaea with metabolisms involving methyl-coenzyme M reductase (MCR), the final step in methanogenesis, …
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Boosting Small Molecule Production in Super “Soup”
… to accelerate bio-design and identifying the best sets of enzymes that enable synthesis of sustainable chemical … than were noted inside the cell. “One of the huge advantages of the cell-free system is that the cells are no …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… an average surface temperature of about 58° Fahrenheit (14° Celsius) — a cool intermediate to the ocean’s extremes of … findings, like antibiotics, pharmaceuticals, and novel enzymes that function at low temperature.” said Katrin … 5th Assessment Report to predict where and how fast the 14° Celsius boundary is moving. “It’s driven by climate: warm …
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