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Computationally Classifying Fungal Lifestyles
… genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data … species.  The Impact The class  Dothideomycetes includes fungi that obtain nutrients from decaying organic matter … Dothideomycetes could provide more insights into how these fungi have adapted to stress and host specificity, …
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Katherine Louie
… where she manages metabolomics production for community sequencing projects and heads R&D efforts to expand the … BP, Olson HM, Purvine SO, Salamov A, et al. Anaerobic gut fungi are an untapped reservoir of natural products. Proc …
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Jeremy Schmutz
… of the Human Genome Project in 2003, he developed sequencing, assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to … to continuing to develop strategies for plant genome sequencing, he manages the de novo plant assembly and the …
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An Addiction Crucial to a Fungus’ Reproduction
… transcriptomic dataset of sexual reproduction in early fungi and discovered genes that are critical for this … on a poorly understood group of oleaginous or oil-producing fungi, and the impact this mutualistic interaction has on these potential large-scale biodiesel producing fungi. Summary In heritable mutualisms, hosts pass on …
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Biodesign
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… this phenotype.’”  Results from A “Massive Amount” of Sequencing  Seed dispersal is critical for plants in the … of Jeremy’s group. It’s just a massive amount of sequencing.”  A Resource for Many Applications Kellogg noted … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… Wisconsin Institute for Discovery (WID) are interested in sequencing secondary metabolite-producing environmental … is interested in understanding which species of mycorrhizal fungi are important for poplar plant health, in part to … Ozias-Akins from the University of Georgia is interested in sequencing relatives of switchgrass that are apomictic. This …
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Mining Public Databases Yields Largest Map of Fungal Mitochondrial Genomes to Date
… The team identified 15 core genes shared across all fungi, and found that some of these genes have moved from … The next step applied metagenomic binning (grouping sequencing reads by their likely organism of origin) … mitochondrial genomes from existing data without any new sequencing. In a parallel effort to search existing genome …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… was possibly driven by genetics, or even temperature. By sequencing the genome, researchers were able to pinpoint …
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The fungus that made itself at home
… so destructive in houses. A study involving six brown rot fungi reveals the genomic changes Serpula lacrymans has … User Facility, compared the genomes of two strains of fungi Serpula lacrymans – var. lacrymans from Europe and … or confrontation experiments, involving these three Serpula fungi against three other brown rot fungi to see how the …
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JGI Announces 2025 New Investigator Portfolio
… including the genomic dynamics of biofuel-producing fungi, the effects of biochar on rhizosphere microbiomes, … such as metatranscriptomics and environmental DNA sequencing to explore microbial and plant interactions …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… bacteria play on mating habits of Mucoromycota fungi, and their effects on these oil-producing species. Many fungi have beneficial symbiotic relationships with plants … efforts appear to be redistributing water availability. By sequencing the millet rhizosphere and endosphere communities …
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