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Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis.
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… data, a new JGI tool more accurately facilitates microbial genome discoveries. Unlocking the intricate … generative model  now available to the global research community able to not just analyze but also create DNA … biological sequences such as biosynthetic gene cluster structures. Zhong Wang, a computational biologist at …
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JGI Advisory Committees Code of Conduct
… Guiding Principles All staff members of the US Department of Energy (DOE) Joint … committees serve as ambassadors and role models for the community, demonstrating the highest standards of ethical … transparently, and ethically; Act on behalf of the JGI user community rather than personal agendas; Treat all other …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … (thermophilic) microbes are of interest for their potential use in number of biotechnological applications. … (gene expression), and direct microscopy. Through the JGI’s Community Science Program , the team used metagenome …
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Dinoflagellates alter their carbon and nutrient metabolic strategies across environmental gradients in the central Pacific Ocean
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The Science A team led by researchers at the … (Berkeley Lab). The work was enabled in part through JGI’s Community Science Program through a proposal akin to the … Energy Contract DE-AC02-05CH11231, a Joint Genome Institute Community Science Program grant (CSP 982), and funds from …
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Soil virus offers insight into maintaining microorganisms
… may promote soil health. The work was enabled in part by a community data portal of the U.S. Department of Energy (DOE) … to another, which can have a significant impact on the microbial communities within soil. Using metagenomics, … drift and diversification processes. The high-resolution structure of chitosanase was obtained at SLAC by irradiating …
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Webinar: MycoCosm Tutorial
… A(nswer): Our focus is on fungi, algae, plants, and the microbial world but we also annotated several Phytophthora … the organism’s ecology, mostly based on literature and user community inputs. We also have the potential to create new … While are still working on finalizing the tree and related publication the tree is still in development and not …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… For the first time, a team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … the strategy of lysogeny. The ability of the virus to tag along with the host has earned this strategy a riff, … The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of …
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nifH pyrosequencing reveals the potential for location‐specific soil chemistry to influence N2‐fixing community dynamics
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Approved Proposals
… Click the cards below to view a downloadable pdf of accepted proposals from previous fiscal years for our Community Science Program (CSP) as well as the Facilities …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of … at different depths. In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … Processes and Ecology and the Daniel K. Inouye Center for Microbial Oceanography: Research and Education. …
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