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A Grass Model to Help Improve Giant Miscanthus
Miscanthus  sequence offers insights into benefits of polyploidy … The Science A reference genome sequence and genomic toolkit for the perennial grass Miscanthus sinensis has been … Researchers at CABBI and elsewhere are following up on these discoveries to develop new varieties of …
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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The … compounds shared by most living creatures for energy, growth and reproduction—most organisms produce a … more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI … sorting (FACS) to sort cells into several small pools before sequencing to recover rare microbes. The technique was … Roux, a member of Eloe-Fadrosh’s Environmental Genomics group, makes a pitch for readers to get involved in the …
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Zwartia hollandica gen. nov., sp. nov., Jezberella montanilacus gen. nov., sp. nov. and Sheuella amnicola gen. nov., comb. nov., representing the environmental GKS98 (betIII) cluster.
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Close association of RNA polymerase II and many transcription factors with Pol III genes
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
As part of the JGI’s 25th anniversary celebration, the 2022 … at the JGI’s history, from its beginnings in the sequencing for the Human Genome Project out to the future of the … project, which spanned nearly two decades, was filled with ups and downs, challenges and triumphs, and a lot of hard …
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Soil exchange rates of COS and CO18O differ with the diversity of microbial communities and their carbonic anhydrase enzymes
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Streamlining Regulon Identification in Bacteria
RIViT-seq technology could speed up associating transcription factors with their target … regulation is critical to ensuring genes vital for growth and survival across various environments are …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data … virus sequences vary widely. In a previous effort, an international consortium recommended specific … for characterizing uncultivated viruses. Following up on those guidelines, JGI researchers have now developed …
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … algae and plants. These molecules, which are not essential for fundamental growth, provide critical advantages to the … characterize bioactive secondary metabolite compounds. To support users, our efforts include developing computational …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … In 2009, researchers at the JGI and the Bigelow Laboratory for Ocean Sciences described a novel technique to access … genomics and synthetic biology, a team studying microbial populations in oxygen minimum zones identified SAR11 …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete … the  genomes of microorganisms is incredibly useful for understanding the microbiome of the earth, but most … for collecting genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) …
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