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A Community Resource for Secondary Metabolite Researchers
The Secondary Metabolism Collaboratory encourages user engagement. The Science In addition to the core set of "primary … and viral BGC sequences. Expansion of the SMC to include fungal, plant, viral, and metagenome data is currently …
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David Goodstein
… for the JGI's direct collaborators and the wider plant science community. Dr. Goodstein’s group also develops and maintains the Phytozome Plant Genomics web portal. … BS in Physics, New York University, … 2023. JGI Plant Gene Atlas: an updateable transcriptome resource to improve functional gene descriptions across the …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… (Toby) Kellogg and other researchers at the Danforth Plant Science Center (Danforth Center) drove up and down the … seed dispersal in wild populations for the first time.  “To our knowledge, nobody has ever discovered a dispersal gene … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Help from Citrus’ Bitter, Hardier Cousin
… citrus, trifoliate orange ripens only bitter, intensely sour fruit. Yet this plant, native to China and now … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are … such as heat waves, droughts and floods. The planet’s resources are being stretched by a growing human population and … will ultimately be published on the  JGI plant data portal Phytozome . … This research was funded in part by DOE …
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Institutional User Agreements
… signing official must have the legal authority to commit your institution or organization to the terms and conditions … or Legal Representative. Please check with your unit director or supervisor for the appropriate contact … completion of work on all approved proposals within 36 months from the approved start date. Additional time …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … They hypothesized that certain gene families — including fungal genes horizontally transferred — contributed to the … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific …
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MycoCosm Tutorial
Learn more about MycoCosm, a data portal with over 2,000 fungal genomes and multi-omics … equipped with interactive web-based tools for comparative genomics and community annotation. Presented by Igor …
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New Research Sheds Light on Diversity in the Deep Sea
… deep-sea vents hold vast potential for bioenergy.   The Science Hydrothermal vents are ocean-floor openings in the … JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) portal. The study,  published in the  Microbiome journal, broadens our understanding of the unique …
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JGI User Executive Committee Expands
… of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … in finding ways to boost visibility of the CSP to encourage more plant proposals and provide feedback on … Area. He has partnered with the JGI through several user programs. He’s also bringing his fungal genetics expertise …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… community involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency … populations rely heavily on groundwater as their only source of clean drinking water. Over 90% of the PCE in the … (Data from the project are available on the  JGI Genome Portal .) The team has also been able to discover additional …
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Fungal genomes mining to discover novel sterol esterases and lipases as catalysts
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