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JGI-USCCN Strain Sequencing Opportunity
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Programs & Platform Leads
… As an Integrative Genome Science User Facility, the JGI plays a leadership role in providing genome science capabilities to support BER's mission of achieving a … and infrastructure security. In complement to the Community Science Program, JGI researchers drive innovations that …
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iPHoP: A Matchmaker for Phages and their Hosts
… computation helps fill in what cultivation can’t. The Science At first, viruses are merely toolkits. To do … are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National … at a larger scale through downstream DNA purification and sequencing steps. Ultimately, researchers found their …
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Busting the Unbreakable Lignin
… fungi can degrade the hardiest of plant components   The Science There are three main ingredients to tackle when it … perhaps the accepted narrative wasn’t quite accurate, and maybe anaerobic fungi living in soils or the guts of … for lignin deconstruction. (The JGI also conducted RNA sequencing and alignment to the reference fungal  genome . …
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Soil virus offers insight into maintaining microorganisms
… identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, researchers have identified a protein in soil viruses that may promote soil health. The work was enabled in part by a … AMGs exist in the first place, and what function other AMGs may serve.  The work was enabled in part under the DOE’s …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … a role in the evolution of the Thiomargarita magnifica extreme size, and whether or not pepins are present in other … can find some TEM pictures and see what look like pepins so maybe people saw them but did not understand what they were. …
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Tracing the Evolution of Shiitake Mushrooms
… diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the same … at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, and assembling … and transcriptome sequencing were enabled by the Community Science Program (CSP) at the U.S. Department of Energy (DOE) …
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… made possible by CRISPR-Cas9; the Weizmann Institute of Science’s Assaf Vardi, who delved into algae blooms and the … had a powerful tool.” Keynote Talk Title: CRISPRology — The Science and Applications of  Genome Editing (Virtual) … to realistically implement. CRISPR-Cas9, Doudna said, may work better and be more cost-effective. “There are still …
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How Maize Makes An Antibiotic Cocktail
… it against infections — using surprisingly few enzymes. The Science Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. … cultivated for bioenergy. The zealexin synthesis pathway may be especially amenable to transfer into other plants … (1758976 to A.H. and E.S.) for sesquiterpenoids, National Science Foundation Plant-Biotic Interactions Program (grant …
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Doubling Down on Known Protein Families
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic … is working on soil environments or the human body — they may take some of those families and try to functionally …
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A Cost-Efficient Way to Convert Yeast into a Cell Factory for Hydroxyapatite
… collaboration is available for licensing. The Science In  Nature Communications , researchers describe a … efforts align with BER missions to provide the fundamental science to support innovations for bioproduction and advance … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science …
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