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DAS Tool for Genome Reconstruction from Metagenomes
… genome recovery from metagenomes. The Science Through the JGI’s Emerging Technologies Opportunity Program (ETOP) , … been utilizing metagenomics as a way to study a collection of hard-to-culture microbes, but the efficacy of this … team led by longtime JGI collaborator Jill Banfield of the University of California, Berkeley and involving JGI …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… A genetic architecture that is characteristic of the sex chromosomes of mammals is, for the first time, … specimen. Stephen DiFazio, plant biologist at West Virginia University (WVU), led the study’s international team, which … National Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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Making a Lichen Together
… For the first time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership … team led by Daniele Armaleo, a biologist at Duke University, investigated Gray’s Cup lichen  (Cladonia grayi) … & Algal Program lead at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … an international, multi-institutional team. The work was a joint effort led by scientists at the Center for Advanced … across Europe and Asia. CABBI partners include the University of California, Berkeley and the HudsonAlpha …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against infections — using … a dozen enzymes. But researchers have now revealed that just a handful of enzymes are needed to transform zealexins … study’s senior author Alisa Huffaker, a biologist at the University of California, San Diego. The findings could help …
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Virus Discoveries that Keep Getting Bigger
… single-cell work — have quickly accelerated understanding of giant viruses. The Science In the last thirty years, in … researchers from the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … National Laboratory (Berkeley Lab), and Aix Marseille University located in Marseille, France, leverage their …
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles in plant health and environmental … enabled in part by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … a project supported by the JGI Community Science Program, University of California (UC) Merced scientists conducted a …
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Graduate Students Get Thesis Research Opportunity at the JGI
… Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … between 3-12 consecutive months. Their proposed research projects address scientific challenges central to Office of … SCGSR awardee, Ian Rambo from Brett Baker’s lab at the University of Texas-Austin. Rambo will be studying the …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint Genome Institute (JGI) and University of California (UC), Merced. What started with 2 …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close to our JGI hearts, we’re highlighting genomic science research that … we’ll hear from Ed Hall, an ecologist at Colorado State University in Fort Collins. He’s part of a JGI-supported …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for researchers to get a … before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … been sampling microbes at Lake Mendota, which borders the University of Wisconsin-Madison, for over 20 years in order …
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JGI@25: The Little Alga That Could
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … may be more viable for sustainable biofuel production. The JGI published a partial sequence of Chlamydomonas … on the Chlamy pan-genome and Marina Cvetkovska of the University of Ottawa on the multi-omics of arctic-growing …
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