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Synthetic Biology Lab
Biology lab is divided into a DNA synthesis production group and a synthetic biology applications group. The DNA synthesis and assembly group: Our production group operates as user facility that aims …
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Synthetic Biology Informatics Group
Software engineers in the Synthetic Biology Informatics Group develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program .  Representative … Biology pipeline as well as provide process automation support Research Team    … For further details, please reach …
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Metabolomics Technology Group
Team    … For further details, please reach out to the Group Lead …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
… of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes of that lake for over 20 years, …
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How Filamentous Fungi Sense Food
Summary Filamentous fungi are like handymen who show up at a job site for a task that requires a flathead … O’Malley, who leads the JGI’s Sequencing Technologies group. DAP-seq allowed the team to identify the direct binding … at the Fungal Genetics Stock Center. This work was supported by an Energy Biosciences Institute Grant, a …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving and … ). CRAGE enables scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. … to other synthetic biology problems. For example, a group of JGI users led by Steven Hallam at the University of …
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You Can Move, But You Can’t Hide
… called geNomad identifies and classifies MGEs based upon their gene content and their genetic sequences. The … under the direction of Microbiome Data Science Group Lead Nikos Kyrpides at the U.S. Department of Energy … for researching global viral diversity. geNomad has already been downloaded thousands of times, receiving excellent …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Basso. Shayna Bennett : So while here at the JGI, I’ve been studying mobile genetic elements and CRISPR spacers in the conifer needle microbiome, and I’ve been working with Robert Bowers. Andrew Lin : My mentor is … and Dr. Frederik Schulz with the New Lineages of Life Group at JGI. And we’ve been working on isolating and …
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The Expanding Universe of Methane Metabolisms in Archaea
Archaea and Eukarya.   One genome, two metabolic pathways “Up to this point, most phylogenomic trees have relied on … conservation, but the genes for both pathways had never been observed in a single microbial population until now. … depending on environmental conditions, or it could couple the two metabolisms by using sulfite to oxidize methane …
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Community Science Program
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… echoes of others remain.  Until now,  Chloroflexota had not been known to produce flagella — propeller-like structures … a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of … 91951205, and 31970122). Part of this project was supported by a Natural Sciences and Engineering Research …
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Institutional User Agreements
Representative. Please check with your unit director or supervisor for the appropriate contact name, email address … will be required to execute a 2024 version .  The recent updates were approved by the DOE to address the DNA … specifically for the JGI’s DNA Synthesis Program has been implemented. Before work can begin on proposals …
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