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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … scientists, researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Plant Root Atlas for Tracking Developmental Trajectories
… , a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Integrating Experimentation with Data
…   Join the Joint Genome Institute (JGI) and the Environmental Molecular Sciences Laboratory … informed … The JGI and EMSL are U.S. Department of Energy (DOE) Office of Science national scientific user facilities … provide the scientific community access to cutting-edge capabilities for omics-based and analytical …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC bioinformatics computing … biology and bioinformatics approaches in support of meeting DOE mission critical programmatic goals. … Joubert et al., …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, extracting … in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In …
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Understanding Wildfire Recovery, Starting in Soil
… a step further, using both DNA and messenger RNA (mRNA) sequencing to identify those traits that have helped fungi, … and growth.  This study builds on the pyrophilous fungi the JGI has previously sequenced , and provides a powerful … Sciences Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI). EMSL and the JGI are DOE …
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Massie S. Ballon
S. Ballon is the Communications and Outreach Manager at the JGI. Prior to this role, she served as the primary storyteller and social media manager for the JGI. She produced both text-based and multimedia stories … other JGI-relevant content on social media. She is also involved in the JGI’s community outreach efforts. Ms. Ballon …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and … generated by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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John Vogel
Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … al. 2014 Genome Diversity in Brachypodium distachyon : Deep Sequencing of Highly Diverse Inbred Lines 2014 Plant Journal …
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Improved-high-quality draft genome sequence of Rhodococcus sp. JG-3, a eurypsychrophilic Actinobacteria from Antarctic Dry Valley permafrost
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Fields of Breeders’ Dreams: A Team Effort Toward Targeted Crop Improvements
… (HudsonAlpha), and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by DOE’s Bioenergy Research Centers, which initiated the sequencing of the switchgrass genome. DOE’s  Billion Ton …
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